##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935869.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 309928 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80877816783253 33.0 31.0 34.0 30.0 34.0 2 31.853769262538396 33.0 31.0 34.0 30.0 34.0 3 31.876119614878295 33.0 31.0 34.0 30.0 34.0 4 35.61896634056942 37.0 35.0 37.0 33.0 37.0 5 33.652135334658375 37.0 35.0 37.0 32.0 37.0 6 34.589501432590794 37.0 35.0 37.0 30.0 37.0 7 35.66388322449085 37.0 35.0 37.0 32.0 37.0 8 35.64483363878062 37.0 35.0 37.0 33.0 37.0 9 37.509979737229294 39.0 37.0 39.0 35.0 39.0 10 37.08997896285589 39.0 37.0 39.0 33.0 39.0 11 37.10646021011332 39.0 37.0 39.0 34.0 39.0 12 36.98885547611058 39.0 35.0 39.0 33.0 39.0 13 36.86024818667561 39.0 35.0 39.0 33.0 39.0 14 37.89797630417387 40.0 37.0 41.0 33.0 41.0 15 38.03170736429106 40.0 37.0 41.0 33.0 41.0 16 38.03624067525361 40.0 36.0 41.0 33.0 41.0 17 38.01293526238352 40.0 36.0 41.0 33.0 41.0 18 37.98409307968302 40.0 36.0 41.0 33.0 41.0 19 37.892394362561625 40.0 36.0 41.0 34.0 41.0 20 37.92032665651377 40.0 36.0 41.0 34.0 41.0 21 37.80725523347358 39.0 36.0 41.0 33.0 41.0 22 37.88595415709455 40.0 36.0 41.0 33.0 41.0 23 37.85757659843576 40.0 36.0 41.0 34.0 41.0 24 37.80426098964921 39.0 36.0 41.0 33.0 41.0 25 37.649170129836605 39.0 35.0 41.0 33.0 41.0 26 37.67160114607264 39.0 35.0 41.0 33.0 41.0 27 37.63381172401332 39.0 35.0 41.0 33.0 41.0 28 37.54855966547069 39.0 35.0 41.0 33.0 41.0 29 37.57580147647195 39.0 36.0 41.0 33.0 41.0 30 37.38249851578431 39.0 35.0 41.0 33.0 41.0 31 37.38782878604063 39.0 35.0 41.0 33.0 41.0 32 37.32111974394053 39.0 35.0 41.0 33.0 41.0 33 37.218866962649386 39.0 35.0 41.0 32.0 41.0 34 37.14000671123616 39.0 35.0 41.0 32.0 41.0 35 37.02182119718128 39.0 35.0 41.0 32.0 41.0 36 36.88638974213366 39.0 35.0 41.0 31.0 41.0 37 36.824652822591055 39.0 35.0 41.0 31.0 41.0 38 36.78186869208332 39.0 35.0 41.0 31.0 41.0 39 36.73912005368989 39.0 35.0 41.0 31.0 41.0 40 36.65356147234196 39.0 35.0 41.0 31.0 41.0 41 36.505181848687435 39.0 35.0 41.0 31.0 41.0 42 36.508411631088514 39.0 35.0 41.0 31.0 41.0 43 36.36985041687102 39.0 35.0 41.0 30.0 41.0 44 36.21726336439431 39.0 35.0 40.0 30.0 41.0 45 36.1849106889342 39.0 35.0 40.0 30.0 41.0 46 36.08041545133063 38.0 35.0 40.0 30.0 41.0 47 35.9960765080922 38.0 35.0 40.0 30.0 41.0 48 35.90873686791771 38.0 35.0 40.0 29.0 41.0 49 35.80980421259131 38.0 35.0 40.0 29.0 41.0 50 35.67134302160502 38.0 35.0 40.0 28.0 41.0 51 34.27831948065357 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 3.0 10 5.0 11 3.0 12 5.0 13 4.0 14 6.0 15 8.0 16 13.0 17 28.0 18 58.0 19 140.0 20 235.0 21 446.0 22 684.0 23 957.0 24 1393.0 25 1880.0 26 2533.0 27 3177.0 28 3591.0 29 4109.0 30 5220.0 31 6593.0 32 8687.0 33 12447.0 34 21919.0 35 28793.0 36 24143.0 37 36108.0 38 60469.0 39 86225.0 40 43.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.487106682842466 19.496141039209107 22.05350920213727 13.963243075811155 2 32.34105985906404 25.78018120337627 23.777780645827416 18.10097829173227 3 30.30994295449266 26.54939211687876 26.421620505407706 16.71904442322088 4 28.729898557084226 25.62595183397434 27.737732634676444 17.906416974264992 5 25.05743269404507 33.007343641103745 23.665496502413465 18.269727162437725 6 24.33823339614362 35.64827960042332 25.486564621460467 14.526922381972588 7 76.51712655842647 6.279200330399319 12.078611806613148 5.12506130456106 8 75.12906223380914 6.89934436385225 10.999974187553239 6.9716192147853695 9 69.62681655094086 7.072610412741024 13.779652048217649 9.520920988100462 10 39.91120518313931 23.8861929222271 20.491210861877597 15.711391032755994 11 31.91547714307839 24.800598848764874 24.59442193025477 18.689502077901963 12 28.09104049972897 20.828708603288508 30.845551224800598 20.23469967218193 13 23.850700807929584 25.226181564750522 32.656617020727396 18.266500606592498 14 19.70005936862755 29.01964327198575 29.57267494385793 21.707622415528768 15 17.73670013680597 24.281123357683075 39.20910663121757 18.773069874293384 16 20.411514932500452 23.15570067886735 33.886257453344 22.546526935288195 17 19.683603933816887 23.36574946439173 29.54008672982112 27.410559871970264 18 20.76611341989107 24.761234867453087 32.504000929248086 21.96865078340776 19 22.762060865749465 26.429364239436254 27.899705738106917 22.908869156707365 20 25.100023231202083 25.262964301386127 28.579541054696573 21.057471412715213 21 22.428757646937353 28.362393846312695 28.798624196587596 20.410224310162363 22 19.486784027257944 25.063885805735524 27.33215456493121 28.117175602075324 23 19.860096538550888 28.563730931054955 27.799682506904826 23.776490023489327 24 21.58114142639581 23.5996747631708 30.05698097622674 24.762202834206654 25 19.85557936036757 27.054993417826072 28.035221083606515 25.05420613819984 26 19.89946051986268 27.215998554502978 29.789176841072766 23.095364084561577 27 22.627836142587956 26.354185488242432 28.500490436488473 22.51748793268114 28 18.907939908623938 26.009266668387497 31.208538757388816 23.874254665599754 29 22.37390619756847 23.022121266874887 30.560968999251436 24.043003536305207 30 21.62469993030639 24.809633205131515 29.798211197439407 23.767455667122686 31 22.857889574352754 24.612813298572572 26.827198575152938 25.702098551921736 32 24.195296972199994 24.90642988048837 28.731189179422316 22.16708396788932 33 22.753026509382824 23.101817196252032 28.12298340259673 26.02217289176841 34 21.54080947833045 22.001884308613615 31.204344234790014 25.25296197826592 35 21.3339872486513 21.671162334477685 31.743824372112233 25.251026044758785 36 24.796081670581554 22.0906145943574 29.68850829870163 23.424795436359414 37 20.69577450246509 23.60870911953744 34.035969644562606 21.659546733434862 38 19.877197284530602 24.585387573888127 29.034162773289278 26.503252368291992 39 23.110851552618673 21.22912418368137 31.416651609406053 24.2433726542939 40 22.16998786815002 21.074894814279446 33.00798895227279 23.747128365297744 41 20.678028445316333 23.014054877261817 30.600010324978705 25.70790635244315 42 23.820693838568957 21.497250974419867 31.092382746960585 23.589672440050595 43 24.2998373815854 21.602436694974315 29.9647014790532 24.133024444387082 44 21.515642342737667 23.002439276218993 29.20678351100901 26.27513487003433 45 20.856779639141994 21.676970134999095 29.866936836942777 27.599313388916137 46 24.103985441780026 22.514906688004956 29.46458532304277 23.91652254717225 47 20.21017784775819 21.45466043726285 34.29764332361064 24.037518391368316 48 21.460145582199736 20.531865465527478 31.632185539867326 26.375803412405464 49 21.61889212978498 19.49904493946981 33.529077721277204 25.352985209468002 50 20.638019152835497 20.734815828192353 31.994850416871017 26.632314602101133 51 19.856547327121138 20.546062311246484 29.169355463204354 30.428034898428024 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 168.0 1 354.0 2 540.0 3 1140.0 4 1740.0 5 1215.0 6 690.0 7 696.5 8 703.0 9 721.0 10 739.0 11 754.0 12 769.0 13 775.5 14 782.0 15 768.0 16 754.0 17 1023.5 18 1293.0 19 1080.5 20 868.0 21 920.0 22 972.0 23 1062.0 24 1152.0 25 1267.5 26 1581.5 27 1780.0 28 2087.5 29 2395.0 30 2661.5 31 2928.0 32 3669.5 33 4411.0 34 4773.0 35 5135.0 36 5869.0 37 6603.0 38 7644.5 39 8686.0 40 10625.0 41 12564.0 42 14802.5 43 17041.0 44 19916.0 45 22791.0 46 29315.5 47 35840.0 48 36875.0 49 37910.0 50 37487.5 51 37065.0 52 31230.5 53 25396.0 54 21657.5 55 17919.0 56 15713.0 57 13507.0 58 12574.5 59 11642.0 60 10981.0 61 10320.0 62 9355.5 63 8391.0 64 6866.0 65 5341.0 66 4310.5 67 3280.0 68 2801.5 69 2323.0 70 1835.0 71 1347.0 72 1115.0 73 883.0 74 836.5 75 691.0 76 592.0 77 436.5 78 281.0 79 194.0 80 107.0 81 82.5 82 58.0 83 48.0 84 38.0 85 22.0 86 6.0 87 4.0 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 309928.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.941749205657715 #Duplication Level Percentage of deduplicated Percentage of total 1 68.29782115916225 23.181475170771478 2 13.557810471751864 9.203516056200833 3 5.09316430727109 5.186127167418083 4 2.4958218879591887 3.3885024233240775 5 1.4861626169994056 2.5221479412508883 6 1.0457786338241204 2.1297333668336185 7 0.7429873775900175 1.765280386319078 8 0.6085307183812381 1.6523677621787765 9 0.47905585566315545 1.4633994337578526 >10 6.032517730324019 40.86092062489474 >50 0.11154729813818698 2.530271114155662 >100 0.04083427878272916 2.491395873256811 >500 0.0029878740572728654 0.75485576458378 >1k 0.0049797900954547765 2.870006915054318 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGC 1923 0.620466689037454 No Hit GCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 1697 0.5475465269352882 TruSeq Adapter, Index 23 (95% over 24bp) GAATCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTC 1683 0.5430293487519682 TruSeq Adapter, Index 23 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCG 1676 0.5407707596603082 No Hit CCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 1511 0.48753258821403683 TruSeq Adapter, Index 23 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 884 0.2852275367182055 No Hit CTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGCT 842 0.2716760021682455 TruSeq Adapter, Index 20 (95% over 23bp) ACTTTTTTTTCTTTTAATTTTTGTTTTATTTTTTGTAACCACTGTCTTAAT 507 0.16358638135308845 No Hit TCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 452 0.14584032420433135 TruSeq Adapter, Index 23 (95% over 24bp) GAATGACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCT 397 0.1280942670555742 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTCTTGT 331 0.10679899847706564 No Hit CGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTG 327 0.10550837613897421 TruSeq Adapter, Index 20 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCT 320 0.10324978704731422 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2997470380217341 0.0 2 0.0 0.0 0.0 1.700394930435456 0.0 3 0.0 0.0 0.0 2.235357889574353 0.0 4 0.0 0.0 0.0 3.031026561007718 0.0 5 0.0 0.0 0.0 5.378345938411502 0.0 6 0.0 0.0 0.0 6.6670323429957925 0.0 7 0.0 0.0 0.0 8.077037247360677 0.0 8 0.0 0.0 0.0 10.440489403990604 0.0 9 0.0 0.0 0.0 11.383289021966393 0.0 10 0.0 0.0 0.0 13.713184997805943 0.0 11 0.0 0.0 0.0 15.864652435404352 0.0 12 0.0 0.0 0.0 18.21358509073075 0.0 13 0.0 0.0 0.0 19.003123306058182 0.0 14 0.0 0.0 0.0 19.328037479672698 0.0 15 0.0 0.0 0.0 19.949149479879196 0.0 16 0.0 0.0 0.0 21.048759711933094 0.0 17 0.0 0.0 0.0 22.276464211042565 0.0 18 0.0 0.0 0.0 23.765197078031026 0.0 19 0.0 0.0 0.0 24.63314060039751 0.0 20 0.0 0.0 0.0 25.4065460364988 0.0 21 0.0 0.0 0.0 26.313853540177075 0.0 22 0.0 0.0 0.0 27.21373996541132 0.0 23 0.0 0.0 0.0 28.170736429106114 0.0 24 0.0 0.0 0.0 28.898324772205157 0.0 25 0.0 0.0 0.0 29.549766397356805 0.0 26 0.0 0.0 0.0 30.16023076327405 0.0 27 0.0 0.0 0.0 30.724232725020006 0.0 28 0.0 0.0 0.0 31.320177589633722 0.0 29 0.0 0.0 0.0 31.93322320022715 0.0 30 0.0 0.0 0.0 32.61273586123229 0.0 31 0.0 0.0 0.0 33.30289615652668 0.0 32 0.0 0.0 0.0 33.90852068867608 0.0 33 0.0 0.0 0.0 34.46284298288635 0.0 34 0.0 0.0 0.0 35.02781291138587 0.0 35 0.0 0.0 0.0 35.67344673601611 0.0 36 0.0 0.0 0.0 36.24616039854418 0.0 37 0.0 0.0 0.0 36.84629978575669 0.0 38 0.0 0.0 0.0 37.414818925685964 0.0 39 0.0 0.0 0.0 37.97333574249503 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTTACG 35 1.2080818E-7 45.000004 21 GGTATGC 35 1.2080818E-7 45.000004 8 TCTGATC 20 7.025304E-4 45.0 43 GTCGCTC 20 7.025304E-4 45.0 24 CGAACGG 20 7.025304E-4 45.0 2 CGAAACT 20 7.025304E-4 45.0 19 GCGCGAC 40 6.7866495E-9 45.0 9 ATTACGG 20 7.025304E-4 45.0 2 TACGGGT 20 7.025304E-4 45.0 4 CGCGACC 40 6.7866495E-9 45.0 10 ATCGTGA 20 7.025304E-4 45.0 30 GTAATCG 20 7.025304E-4 45.0 13 ATTCCCG 20 7.025304E-4 45.0 13 TTCCCGC 20 7.025304E-4 45.0 14 CCGTAAC 20 7.025304E-4 45.0 36 CTAGTAG 25 3.884191E-5 45.0 1 TGCGAAG 40 6.7866495E-9 45.0 1 ACGTGTG 25 3.884191E-5 45.0 40 ACTACGG 20 7.025304E-4 45.0 2 CGGGATC 40 6.7866495E-9 45.0 6 >>END_MODULE