SRR2935867.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935867.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1004191
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC	7033	0.7003647712437177	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5029	0.5008011424121507	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGC	3773	0.37572533512051	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCG	3480	0.34654761892906827	No Hit
GCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	2562	0.2551307470391589	TruSeq Adapter, Index 13 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCT	2249	0.22396137786536624	No Hit
CCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	1386	0.13802155167692204	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTT	1386	0.13802155167692204	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1313	0.13075201829134098	No Hit
CGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTG	1065	0.106055521310189	No Hit
CTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGCT	1041	0.10366553773136784	Illumina Single End Adapter 2 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCG	25	3.890453E-5	45.0	34
CTCGTAC	50	2.1827873E-11	45.0	29
ATTCACG	20	7.032862E-4	45.0	22
TCGTATC	25	3.890453E-5	45.0	33
CGGTCTA	90	0.0	45.0	31
ATAACGG	60	0.0	44.999996	2
CGTTTTT	2375	0.0	42.06316	1
CGTAAGG	180	0.0	41.25	2
ACGTAAG	60	3.6379788E-12	41.249996	1
TTGTACG	45	1.9279469E-8	40.0	1
GCGATAT	90	0.0	40.0	9
TTTAGCG	85	0.0	39.705883	1
CCCTCGT	35	6.247501E-6	38.571426	27
CACGGGT	70	0.0	38.571426	4
TACACGG	100	0.0	38.25	2
CGGGTAC	130	0.0	38.076927	6
ACGATAG	30	1.1398192E-4	37.499996	1
TCGTACG	60	1.546141E-10	37.499996	30
TAGACGG	170	0.0	37.058823	2
ATGGGAC	770	0.0	36.818184	5