SRR2935865.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935865.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1209926
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17969	1.4851321485776816	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC	11944	0.9871678102627764	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC	6093	0.5035845167390403	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCG	5355	0.4425890509006336	No Hit
GAACTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCT	4592	0.3795273429945302	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTT	3760	0.310762806981584	No Hit
CGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTG	3187	0.2634045387899756	No Hit
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	3054	0.2524121309898291	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC	2829	0.2338159523805588	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCT	2611	0.2157983215502436	No Hit
CGTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCT	2026	0.16744825716614073	No Hit
CCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	1726	0.14265335235378032	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTT	1594	0.13174359423634172	No Hit
CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGCT	1544	0.12761111010094833	Illumina PCR Primer Index 1 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTC	1336	0.11041997609771176	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCT	1213	0.10025406512464399	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGCG	40	6.8157533E-9	45.0	1
CCGACTT	25	3.8909282E-5	45.0	44
CGTTATT	880	0.0	44.74432	1
CGTTTTT	12285	0.0	43.9011	1
CGTAAGG	145	0.0	41.89655	2
CGTTTCT	505	0.0	41.88119	1
CTATGCG	45	1.9284926E-8	40.0	1
TCAACGG	45	1.9284926E-8	40.0	2
CATACGG	75	0.0	39.0	2
TTAACGG	105	0.0	38.57143	2
ACTTGCG	35	6.2485615E-6	38.571426	1
TACGGCT	915	0.0	38.11475	7
CGCTAGG	130	0.0	38.07692	2
GTTTTTT	14255	0.0	37.565765	2
GCGAGAC	240	0.0	37.499996	21
GTAACCG	30	1.13995746E-4	37.499996	1
CGTTCTG	355	0.0	37.394367	1
CGCATGG	170	0.0	37.058823	2
CAAGGGA	1230	0.0	36.585365	4
GACACGA	240	0.0	36.5625	25