SRR2935864.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935864.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	312476
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	916	0.2931425133450249	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	813	0.26017998182260393	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	508	0.16257248556689152	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	449	0.14369103547152423	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACAATC	25	3.8842656E-5	45.0	12
CGCGCAT	45	3.8198777E-10	45.0	36
TACGGGT	20	7.0253934E-4	45.0	4
TACGCGG	25	3.8842656E-5	45.0	2
ATGAGTC	20	7.0253934E-4	45.0	18
TTGCGAG	25	3.8842656E-5	45.0	1
CGAATCT	20	7.0253934E-4	45.0	25
TTAACGG	40	6.7884685E-9	45.0	2
CGGTCTA	35	1.2081364E-7	45.0	31
CGCACTG	20	7.0253934E-4	45.0	31
GCTACGA	40	6.7884685E-9	45.0	10
TATACGG	20	7.0253934E-4	45.0	2
CTCACGA	30	2.16041E-6	44.999996	24
CGACGGT	30	2.16041E-6	44.999996	28
ACGGGTA	30	2.16041E-6	44.999996	5
ACTACGG	30	2.16041E-6	44.999996	2
AACGAGC	80	0.0	42.1875	15
CATTGGG	105	0.0	40.714287	3
CGGGTAT	50	1.0768417E-9	40.5	6
CGCATGT	50	1.0768417E-9	40.5	38