SRR2935863.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935863.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	181535
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTC	950	0.523315063210951	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCG	935	0.5150521937918308	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGC	911	0.5018316027212384	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	670	0.3690748340540392	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	381	0.20987688324565512	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	278	0.1531385132343625	No Hit
CTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGCT	263	0.14487564381524223	Illumina Single End Adapter 2 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTT	201	0.11072245021621174	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCT	192	0.10576472856473958	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTATGG	55	1.8189894E-12	45.000004	2
CGTTAGG	25	3.8777907E-5	45.000004	2
TGCGAAG	25	3.8777907E-5	45.000004	1
CGGGAAC	25	3.8777907E-5	45.000004	6
CGGTAGG	25	3.8777907E-5	45.000004	31
GCGAGAC	45	3.8016879E-10	45.0	21
GTTTGCG	20	7.017579E-4	45.0	1
AGGTACA	20	7.017579E-4	45.0	36
ACCGGCG	20	7.017579E-4	45.0	20
CTCCGAC	20	7.017579E-4	45.0	21
TACGGGT	20	7.017579E-4	45.0	4
AAGCCCG	20	7.017579E-4	45.0	14
GTGTACG	20	7.017579E-4	45.0	1
AAACACG	45	3.8016879E-10	45.0	40
CGTAAGG	35	1.2043893E-7	45.0	2
AAGGGCG	70	0.0	45.0	5
CGAGACA	45	3.8016879E-10	45.0	22
CGATGAG	20	7.017579E-4	45.0	10
CCACGAG	20	7.017579E-4	45.0	35
CGTCATA	20	7.017579E-4	45.0	38