SRR2935860.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935860.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	506717
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5363	1.0583817002389895	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC	2276	0.4491659052291516	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGC	1944	0.38364609831523316	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCG	1672	0.32996722036166143	No Hit
GCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	1528	0.30154899085682935	TruSeq Adapter, Index 20 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTG	1230	0.2427390436871074	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTT	1195	0.23583183512690514	No Hit
CTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCT	1195	0.23583183512690514	TruSeq Adapter, Index 22 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	1099	0.21688634879035046	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC	959	0.18925751454954146	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCT	801	0.15807640162062847	No Hit
CGTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCT	642	0.1266979398757097	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	616	0.12156687065955948	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCC	566	0.11169942985927055	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCATCG	25	3.8877064E-5	45.000004	1
TCGCAAG	25	3.8877064E-5	45.000004	1
CTATCGA	20	7.029547E-4	45.000004	41
GCGCGAC	20	7.029547E-4	45.000004	9
ATTCGGT	20	7.029547E-4	45.000004	11
TTCGTAG	25	3.8877064E-5	45.000004	1
CGCGACC	20	7.029547E-4	45.000004	10
GCGTTCG	20	7.029547E-4	45.000004	1
CGTTCGG	25	3.8877064E-5	45.000004	2
ACTAGCG	25	3.8877064E-5	45.000004	1
GTCGTTG	25	3.8877064E-5	45.000004	1
TCGAGCG	20	7.029547E-4	45.000004	1
GGCGCGA	20	7.029547E-4	45.000004	8
TACACGG	40	6.8012014E-9	45.000004	2
GTAAACG	20	7.029547E-4	45.000004	1
TCGTTGG	35	1.2101373E-7	45.0	2
ACTACGG	45	3.8380676E-10	45.0	2
CTCCGGG	30	2.1630913E-6	44.999996	3
CGTTTTT	3655	0.0	43.95349	1
CGTTATT	620	0.0	43.91129	1