##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935860.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 506717 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.942518210361996 33.0 31.0 34.0 30.0 34.0 2 32.087316983641756 33.0 31.0 34.0 30.0 34.0 3 31.94261096430552 33.0 31.0 34.0 30.0 34.0 4 35.66117971175232 37.0 35.0 37.0 33.0 37.0 5 31.953836164959927 37.0 35.0 37.0 0.0 37.0 6 33.800762555825045 37.0 35.0 37.0 17.0 37.0 7 35.498007763702425 37.0 35.0 37.0 32.0 37.0 8 35.76555158007329 37.0 35.0 37.0 35.0 37.0 9 37.73368171977652 39.0 37.0 39.0 35.0 39.0 10 37.30643337405297 39.0 37.0 39.0 34.0 39.0 11 37.28864829875453 39.0 37.0 39.0 34.0 39.0 12 37.370950648981584 39.0 37.0 39.0 34.0 39.0 13 37.39319975449807 39.0 37.0 39.0 34.0 39.0 14 38.66344527616007 40.0 38.0 41.0 35.0 41.0 15 38.768543388123945 40.0 38.0 41.0 35.0 41.0 16 38.6880092832883 40.0 38.0 41.0 35.0 41.0 17 38.6782563048013 40.0 38.0 41.0 35.0 41.0 18 38.5143186433453 40.0 38.0 41.0 35.0 41.0 19 38.282702178928275 40.0 37.0 41.0 34.0 41.0 20 38.24758790409637 40.0 37.0 41.0 34.0 41.0 21 38.19155465476785 40.0 37.0 41.0 34.0 41.0 22 38.27335179202592 40.0 37.0 41.0 34.0 41.0 23 38.264990122691756 40.0 37.0 41.0 34.0 41.0 24 38.228277322450204 40.0 37.0 41.0 34.0 41.0 25 37.97713319268941 40.0 36.0 41.0 34.0 41.0 26 38.019273085371125 40.0 36.0 41.0 34.0 41.0 27 37.96608165899309 40.0 36.0 41.0 34.0 41.0 28 37.88306885302842 40.0 36.0 41.0 34.0 41.0 29 37.82823351101305 40.0 36.0 41.0 33.0 41.0 30 37.62738175352317 40.0 36.0 41.0 33.0 41.0 31 37.522427706194975 40.0 36.0 41.0 33.0 41.0 32 37.26192529557919 40.0 36.0 41.0 32.0 41.0 33 36.97143967934765 40.0 36.0 41.0 31.0 41.0 34 36.66019494116045 40.0 36.0 41.0 30.0 41.0 35 36.54544844558205 40.0 36.0 41.0 30.0 41.0 36 36.41086050004243 40.0 36.0 41.0 29.0 41.0 37 36.34143516005976 40.0 36.0 41.0 29.0 41.0 38 36.219538716877466 40.0 35.0 41.0 27.0 41.0 39 36.12242731149735 40.0 35.0 41.0 27.0 41.0 40 36.096783806345556 40.0 35.0 41.0 27.0 41.0 41 35.96233795195346 40.0 35.0 41.0 26.0 41.0 42 35.94321287819434 40.0 35.0 41.0 26.0 41.0 43 35.858362754752655 40.0 35.0 41.0 25.0 41.0 44 35.81143123281832 39.0 35.0 41.0 25.0 41.0 45 35.78655541456079 39.0 35.0 41.0 25.0 41.0 46 35.657173530787404 39.0 35.0 41.0 24.0 41.0 47 35.54617863620127 39.0 35.0 41.0 24.0 41.0 48 35.51037364051334 39.0 35.0 41.0 24.0 41.0 49 35.47644937904195 39.0 35.0 41.0 24.0 41.0 50 35.36159631510291 39.0 35.0 41.0 24.0 41.0 51 34.33499961516981 38.0 34.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 9.0 10 16.0 11 8.0 12 3.0 13 6.0 14 8.0 15 16.0 16 31.0 17 62.0 18 142.0 19 289.0 20 525.0 21 894.0 22 1464.0 23 2381.0 24 3798.0 25 6432.0 26 8526.0 27 9005.0 28 8200.0 29 7617.0 30 7700.0 31 8898.0 32 11163.0 33 15000.0 34 23156.0 35 31796.0 36 36022.0 37 56340.0 38 97563.0 39 169532.0 40 107.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.56939080393987 19.191382961297922 23.221048435319915 17.01817779944229 2 38.4459175437177 22.913776328798914 23.263478430761158 15.376827696722234 3 28.320936538541236 23.818423301369403 32.59393310269835 15.26670705739101 4 24.751488503444723 23.448196922542564 34.24929497135482 17.551019602657895 5 21.585816145896032 34.98224847400028 27.56331443389505 15.868620946208633 6 22.177467896281357 33.28268047055852 30.128059646706152 14.411791986453979 7 74.77921601209353 4.119064487672606 16.44941851171364 4.652300988520219 8 75.6968880065204 4.8247838537092695 14.940094766901446 4.53823337286888 9 70.00771633870583 6.028611631344518 16.834643400556917 7.129028629392738 10 31.683957712095705 30.374548317897364 24.22515921115731 13.716334758849612 11 22.6059121758299 24.06629341427266 34.795161796426804 18.532632613470636 12 20.605979274427344 21.826779050239086 37.067436063917334 20.49980561141623 13 20.821878879137664 23.010279899825743 38.95448544256458 17.213355778472007 14 18.310220497832123 26.93673194307671 35.57883394478575 19.174213614305422 15 16.97259022294496 25.71553746963295 39.16742481503482 18.14444749238727 16 20.16865429815854 26.161348444990008 34.398490676255186 19.27150658059627 17 19.81145294118808 25.227296498834654 34.40421379191936 20.55703676805791 18 20.81595841465749 24.35521208090512 35.57784720070572 19.250982303731668 19 18.928316989562223 27.72474576538778 33.27912819187041 20.067809053179587 20 19.915850464855136 26.511642593400257 34.576499308292405 18.9960076334522 21 19.261244442163967 28.389416577695243 34.788254587866604 17.56108439227419 22 19.480301627930384 23.52970198355295 34.87508806690914 22.114908321607523 23 17.56246583398623 27.11888490025004 34.19581344221726 21.122835823546477 24 18.318706496920374 25.342745556198036 35.133812364692716 21.204735582188874 25 17.986765788398653 28.53288916693144 32.69773857991739 20.782606464752515 26 18.350282307481297 27.551276156118703 33.61600262079228 20.482438915607727 27 19.747709273618213 26.04136036485849 32.71767081033397 21.493259551189322 28 18.342585703657072 25.86986424374947 34.41743616259174 21.370113890001715 29 19.78579759510733 25.081455723806386 32.884035862226845 22.248710818859443 30 19.65771821351958 25.80533118091558 32.1755536127661 22.361396992798742 31 21.113165731562194 25.66738435852754 30.840291523671006 22.37915838623926 32 21.26670311041469 26.89272315710742 31.008630063723935 20.83194366875396 33 20.063467379227458 25.203614640913962 30.190027174931966 24.542890804926614 34 19.340973363830305 26.346461634403422 32.32553871293049 21.987026288835782 35 19.448725817369457 25.72639165451327 32.27679355537706 22.548088972740207 36 19.722053927537463 28.049384567717283 30.352247901688713 21.876313603056538 37 19.743762297298098 26.752605497743314 32.37862554443605 21.12500666052254 38 20.269302194321483 26.497038781015835 30.66978214664201 22.563876878020668 39 21.376823749745913 25.859207407685158 30.951004209450243 21.812964633118685 40 20.055770775403232 24.56696736047932 33.5281823976697 21.84907946644774 41 18.038076480560157 27.465232072340186 31.502594150186397 22.994097296913267 42 20.235752895600502 26.531180126184832 32.227653700191624 21.00541327802304 43 21.107837313530037 26.49013157245563 30.439278729547265 21.96275238446707 44 20.894503243427792 25.527464047979443 29.82710270229734 23.750930006295427 45 20.443363850038583 24.32482036324023 30.25238940078979 24.979426385931397 46 21.806649471006498 25.106519023439116 30.320277393495775 22.766554112058603 47 19.445173538681352 24.924563415081792 33.138615834874294 22.491647211362555 48 19.609170404782155 25.064483725629888 31.616267068205723 23.71007880138223 49 20.861151293522813 23.666859410676967 32.40211005354073 23.069879242259486 50 19.95078120528816 23.44464464385446 32.40171535590872 24.20285879494866 51 19.438068981305147 22.962324137536335 30.711422746819228 26.888184134339287 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 126.0 1 265.5 2 405.0 3 5256.5 4 10108.0 5 7045.5 6 3983.0 7 3905.5 8 3828.0 9 3824.0 10 3820.0 11 3840.5 12 3861.0 13 3731.5 14 3602.0 15 3387.0 16 3172.0 17 3063.0 18 2954.0 19 2881.0 20 2808.0 21 2854.0 22 2900.0 23 2944.0 24 2988.0 25 3444.0 26 4359.5 27 4819.0 28 5608.5 29 6398.0 30 7739.0 31 9080.0 32 9624.5 33 10169.0 34 11966.0 35 13763.0 36 15613.5 37 17464.0 38 19084.5 39 20705.0 40 22609.0 41 24513.0 42 26930.0 43 29347.0 44 32903.0 45 36459.0 46 46227.5 47 55996.0 48 56650.0 49 57304.0 50 55405.0 51 53506.0 52 45938.0 53 38370.0 54 33073.5 55 27777.0 56 22858.5 57 17940.0 58 15169.5 59 12399.0 60 10349.0 61 8299.0 62 6876.5 63 5454.0 64 4493.5 65 3533.0 66 2776.5 67 2020.0 68 1608.0 69 1196.0 70 938.5 71 681.0 72 555.5 73 430.0 74 369.0 75 239.5 76 171.0 77 119.5 78 68.0 79 59.5 80 51.0 81 40.5 82 30.0 83 19.0 84 8.0 85 5.5 86 3.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 506717.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.47302876053218 #Duplication Level Percentage of deduplicated Percentage of total 1 76.4135389154443 35.51168591711488 2 9.811900670486216 9.119774841099817 3 3.7214085239548886 5.188353760903355 4 2.0802740117398044 3.8670653590948643 5 1.3862488480755233 3.22115912929342 6 1.0572827478745779 2.948107892999385 7 0.8471631942481359 2.7559167643810554 8 0.6510162345179256 2.4203756952259936 9 0.5465790426278783 2.2861065211154576 >10 3.413618126025322 25.277445893199772 >50 0.04617304807838103 1.4337132258474006 >100 0.01881124180667976 1.7808164691847201 >500 0.002137641114395427 0.7120881652971144 >1k 0.003420225783032684 2.4118410263788146 >5k 4.275282228790855E-4 1.0655493388639576 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5363 1.0583817002389895 No Hit GAATCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC 2276 0.4491659052291516 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGC 1944 0.38364609831523316 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCG 1672 0.32996722036166143 No Hit GCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC 1528 0.30154899085682935 TruSeq Adapter, Index 20 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTG 1230 0.2427390436871074 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTT 1195 0.23583183512690514 No Hit CTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCT 1195 0.23583183512690514 TruSeq Adapter, Index 22 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC 1099 0.21688634879035046 TruSeq Adapter, Index 20 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC 959 0.18925751454954146 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCT 801 0.15807640162062847 No Hit CGTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCT 642 0.1266979398757097 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 616 0.12156687065955948 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCC 566 0.11169942985927055 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.9469763201155676E-4 0.0 0.0 0.26148718120765635 0.0 2 3.9469763201155676E-4 0.0 0.0 0.9958221255651577 0.0 3 3.9469763201155676E-4 0.0 0.0 1.5184017903484588 0.0 4 3.9469763201155676E-4 0.0 0.0 2.153864977887065 0.0 5 3.9469763201155676E-4 0.0 0.0 3.9807229676525555 0.0 6 3.9469763201155676E-4 0.0 0.0 5.435775788063159 0.0 7 3.9469763201155676E-4 0.0 0.0 6.671968771523355 0.0 8 3.9469763201155676E-4 0.0 0.0 8.403112585526044 0.0 9 3.9469763201155676E-4 0.0 0.0 9.18342980401289 0.0 10 3.9469763201155676E-4 0.0 0.0 10.926809244607936 0.0 11 3.9469763201155676E-4 0.0 0.0 12.611576086849267 0.0 12 3.9469763201155676E-4 0.0 0.0 14.346469528356065 0.0 13 3.9469763201155676E-4 0.0 0.0 15.06620066032914 0.0 14 3.9469763201155676E-4 0.0 0.0 15.385116346994476 0.0 15 3.9469763201155676E-4 0.0 0.0 15.844544390655928 0.0 16 3.9469763201155676E-4 0.0 0.0 16.617362354134556 0.0 17 5.920464480173351E-4 0.0 0.0 17.639826569860492 0.0 18 5.920464480173351E-4 0.0 0.0 18.641963857537835 0.0 19 5.920464480173351E-4 0.0 0.0 19.368602198071112 0.0 20 5.920464480173351E-4 0.0 0.0 19.997552874681528 0.0 21 5.920464480173351E-4 0.0 0.0 20.775107209744295 0.0 22 5.920464480173351E-4 0.0 0.0 21.581474471943906 0.0 23 5.920464480173351E-4 0.0 0.0 22.431850520112803 0.0 24 5.920464480173351E-4 0.0 0.0 23.063761428963307 0.0 25 5.920464480173351E-4 0.0 0.0 23.696264384261827 0.0 26 5.920464480173351E-4 0.0 0.0 24.264826323174475 0.0 27 5.920464480173351E-4 0.0 0.0 24.857464817639826 0.0 28 5.920464480173351E-4 0.0 0.0 25.449708614473167 0.0 29 5.920464480173351E-4 0.0 0.0 26.070173291995335 0.0 30 5.920464480173351E-4 0.0 0.0 26.767011961311738 0.0 31 5.920464480173351E-4 0.0 0.0 27.390634219889996 0.0 32 5.920464480173351E-4 0.0 0.0 27.999060619635813 0.0 33 5.920464480173351E-4 0.0 0.0 28.61577566965387 0.0 34 5.920464480173351E-4 0.0 0.0 29.20900621056724 0.0 35 5.920464480173351E-4 0.0 0.0 29.780923079351986 0.0 36 5.920464480173351E-4 0.0 0.0 30.298371674919135 0.0 37 5.920464480173351E-4 0.0 0.0 30.866933613831783 0.0 38 5.920464480173351E-4 0.0 0.0 31.415168624695838 0.0 39 5.920464480173351E-4 0.0 0.0 31.97879684320834 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCATCG 25 3.8877064E-5 45.000004 1 TCGCAAG 25 3.8877064E-5 45.000004 1 CTATCGA 20 7.029547E-4 45.000004 41 GCGCGAC 20 7.029547E-4 45.000004 9 ATTCGGT 20 7.029547E-4 45.000004 11 TTCGTAG 25 3.8877064E-5 45.000004 1 CGCGACC 20 7.029547E-4 45.000004 10 GCGTTCG 20 7.029547E-4 45.000004 1 CGTTCGG 25 3.8877064E-5 45.000004 2 ACTAGCG 25 3.8877064E-5 45.000004 1 GTCGTTG 25 3.8877064E-5 45.000004 1 TCGAGCG 20 7.029547E-4 45.000004 1 GGCGCGA 20 7.029547E-4 45.000004 8 TACACGG 40 6.8012014E-9 45.000004 2 GTAAACG 20 7.029547E-4 45.000004 1 TCGTTGG 35 1.2101373E-7 45.0 2 ACTACGG 45 3.8380676E-10 45.0 2 CTCCGGG 30 2.1630913E-6 44.999996 3 CGTTTTT 3655 0.0 43.95349 1 CGTTATT 620 0.0 43.91129 1 >>END_MODULE