SRR2935857.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935857.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	551280
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC	4315	0.7827238426933681	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCG	3146	0.5706718908721521	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC	3116	0.5652300101581773	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2169	0.3934479756203744	No Hit
GCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	2046	0.3711362646930779	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	1084	0.19663328979828762	TruSeq Adapter, Index 13 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCT	971	0.17613553910898272	No Hit
CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT	933	0.1692424902046147	TruSeq Adapter, Index 16 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTT	700	0.12697721665941084	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCT	682	0.12371208823102597	No Hit
CGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTG	597	0.10829342620809752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGAGA	20	7.030088E-4	45.000004	34
CGTTATT	110	0.0	45.000004	1
CCGACGG	40	6.8048394E-9	45.000004	2
CGTAAGC	20	7.030088E-4	45.000004	43
AATAGCG	20	7.030088E-4	45.000004	1
CGATAAC	20	7.030088E-4	45.000004	10
TCGGTAT	20	7.030088E-4	45.000004	38
TACGTTC	20	7.030088E-4	45.000004	19
CGAATGC	45	3.8380676E-10	45.0	45
CGTTTTT	1160	0.0	41.702587	1
CGTAAGG	50	1.0786607E-9	40.5	2
TACGGGA	305	0.0	39.098362	4
GTTGATC	70	0.0	38.571426	16
TAATACG	140	0.0	38.571426	4
CGTTAGG	70	0.0	38.571426	2
TCAACGG	35	6.242375E-6	38.571426	2
CGATGAA	335	0.0	38.283585	19
CCCTCGA	30	1.1391514E-4	37.499996	41
TACGCGG	30	1.1391514E-4	37.499996	2
GGAACGT	30	1.1391514E-4	37.499996	8