SRR2935855.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935855.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	494008
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	1296	0.26234392965296105	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	1265	0.25606872763194116	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1181	0.23906495441369371	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC	931	0.1884584865022429	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG	858	0.17368139787209924	No Hit
CCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	851	0.1722644167705786	No Hit
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	750	0.1518194037343525	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATA	20	7.0293754E-4	45.000004	45
ACTAACG	20	7.0293754E-4	45.000004	1
CGGGTCA	25	3.8875653E-5	45.0	6
CACGACG	35	1.2100463E-7	45.0	26
CTAACGG	55	1.8189894E-12	45.0	2
CCCGATC	45	3.8380676E-10	45.0	41
TAGAACG	30	2.1629803E-6	44.999996	1
CAATGCG	30	2.1629803E-6	44.999996	1
AACGGGC	75	0.0	42.0	4
TACGGGA	375	0.0	41.4	4
ACGGGTA	50	1.0786607E-9	40.5	5
ATCCCCG	50	1.0786607E-9	40.5	38
ACGGGCG	95	0.0	40.263157	5
CGTATGG	45	1.9244908E-8	40.0	2
TAAACGG	45	1.9244908E-8	40.0	2
TGCGAAG	45	1.9244908E-8	40.0	1
GCGATAT	45	1.9244908E-8	40.0	9
GCTAACG	45	1.9244908E-8	40.0	1
GCGTAAG	45	1.9244908E-8	40.0	1
CGAGACA	85	0.0	39.705883	22