SRR2935854.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935854.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	594796
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	9466	1.5914700166107372	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC	8917	1.499169463143666	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG	8098	1.361475194856724	No Hit
GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	3114	0.5235408442558457	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1945	0.3270028715727745	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	1882	0.31641100478147133	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT	1679	0.2822816562317164	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCGAGAAT	1455	0.2446216854181938	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTC	1376	0.23133982071163894	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTA	1285	0.21604045756864537	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC	1043	0.1753542391004647	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG	1041	0.17501798936105822	No Hit
CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	941	0.15820550239073566	No Hit
GAATATGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	925	0.15551550447548404	No Hit
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	834	0.14021614133249047	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT	752	0.12642990201682594	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAA	45	3.8380676E-10	45.000004	12
CCGTAGA	30	2.163728E-6	45.000004	41
ACCGTAG	30	2.163728E-6	45.000004	40
CAATCGA	90	0.0	45.000004	41
CGTCATA	25	3.8885268E-5	45.000004	38
GTACGAG	30	2.163728E-6	45.000004	1
TGCGAAG	40	6.8048394E-9	45.0	1
CGAATAC	40	6.8048394E-9	45.0	45
TATACGT	20	7.030539E-4	45.0	10
CGATGAA	1215	0.0	43.148148	19
CCGATGA	1195	0.0	42.552303	18
AGACCGG	85	0.0	42.35294	2
CGTTATT	145	0.0	41.89655	1
TAATACG	415	0.0	41.74699	4
TACGGCT	1085	0.0	41.474655	7
AATACGG	420	0.0	41.25	5
ACCCGTC	55	6.002665E-11	40.909092	39
CACAACG	160	0.0	40.78125	12
TTAACGG	50	1.0804797E-9	40.500004	2
TCAAGCG	100	0.0	40.500004	17