FastQCFastQC Report
Sat 14 Jan 2017
SRR2935852.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935852.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences749564
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC123891.6528275103927084No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT86661.156138768670854No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC46230.6167585422992566No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG45170.6026169880090293No Hit
GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT39550.527640068092918No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC31260.41704244067217744No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT25050.3341942782737698No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC21160.2822974422464259No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT20370.27175798197352063No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG18100.24147371005010912No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT14050.18744229979027807No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT13360.17823694841267723No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC12830.17116617126756356No Hit
GAATATGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC12120.1616939981109018No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC11980.15982624565747555No Hit
CGTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT11830.15782508231451883No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT10930.1458181022567786No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10220.13634592910011686No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATA207.0317136E-445.00000438
CGATTGA207.0317136E-445.00000410
CCGGTTA207.0317136E-445.00000430
CGTTTTT47850.043.4482771
CCGATGA6150.041.34146518
CGTTATT6200.041.0080681
CGAGACA1100.040.90909222
ACGGGTA501.0804797E-940.5000045
CGGGATA1450.040.344836
TAATACG1850.040.1351364
CGATGAA6400.040.0781319
GGTACGC403.45608E-739.3750048
CCAACGG403.45608E-739.3750042
TACGGCT6000.038.6250047
GCTTACG356.24538E-638.571431
ACGGGAG4500.038.55
CACAACG1700.038.38235512
CGGGTAT659.094947E-1238.0769276
GCGATTT659.094947E-1238.0769279
CGAACAC301.1395429E-437.50000434