Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935852.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 749564 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC | 12389 | 1.6528275103927084 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8666 | 1.156138768670854 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC | 4623 | 0.6167585422992566 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG | 4517 | 0.6026169880090293 | No Hit |
GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT | 3955 | 0.527640068092918 | No Hit |
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC | 3126 | 0.41704244067217744 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT | 2505 | 0.3341942782737698 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC | 2116 | 0.2822974422464259 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT | 2037 | 0.27175798197352063 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG | 1810 | 0.24147371005010912 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT | 1405 | 0.18744229979027807 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT | 1336 | 0.17823694841267723 | No Hit |
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC | 1283 | 0.17116617126756356 | No Hit |
GAATATGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC | 1212 | 0.1616939981109018 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC | 1198 | 0.15982624565747555 | No Hit |
CGTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT | 1183 | 0.15782508231451883 | No Hit |
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT | 1093 | 0.1458181022567786 | No Hit |
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1022 | 0.13634592910011686 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGCATA | 20 | 7.0317136E-4 | 45.000004 | 38 |
CGATTGA | 20 | 7.0317136E-4 | 45.000004 | 10 |
CCGGTTA | 20 | 7.0317136E-4 | 45.000004 | 30 |
CGTTTTT | 4785 | 0.0 | 43.448277 | 1 |
CCGATGA | 615 | 0.0 | 41.341465 | 18 |
CGTTATT | 620 | 0.0 | 41.008068 | 1 |
CGAGACA | 110 | 0.0 | 40.909092 | 22 |
ACGGGTA | 50 | 1.0804797E-9 | 40.500004 | 5 |
CGGGATA | 145 | 0.0 | 40.34483 | 6 |
TAATACG | 185 | 0.0 | 40.135136 | 4 |
CGATGAA | 640 | 0.0 | 40.07813 | 19 |
GGTACGC | 40 | 3.45608E-7 | 39.375004 | 8 |
CCAACGG | 40 | 3.45608E-7 | 39.375004 | 2 |
TACGGCT | 600 | 0.0 | 38.625004 | 7 |
GCTTACG | 35 | 6.24538E-6 | 38.57143 | 1 |
ACGGGAG | 450 | 0.0 | 38.5 | 5 |
CACAACG | 170 | 0.0 | 38.382355 | 12 |
CGGGTAT | 65 | 9.094947E-12 | 38.076927 | 6 |
GCGATTT | 65 | 9.094947E-12 | 38.076927 | 9 |
CGAACAC | 30 | 1.1395429E-4 | 37.500004 | 34 |