SRR2935852.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935852.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	749564
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	12389	1.6528275103927084	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8666	1.156138768670854	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC	4623	0.6167585422992566	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG	4517	0.6026169880090293	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	3955	0.527640068092918	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	3126	0.41704244067217744	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	2505	0.3341942782737698	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	2116	0.2822974422464259	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	2037	0.27175798197352063	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1810	0.24147371005010912	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	1405	0.18744229979027807	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	1336	0.17823694841267723	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	1283	0.17116617126756356	No Hit
GAATATGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	1212	0.1616939981109018	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC	1198	0.15982624565747555	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	1183	0.15782508231451883	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	1093	0.1458181022567786	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1022	0.13634592910011686	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCATA	20	7.0317136E-4	45.000004	38
CGATTGA	20	7.0317136E-4	45.000004	10
CCGGTTA	20	7.0317136E-4	45.000004	30
CGTTTTT	4785	0.0	43.448277	1
CCGATGA	615	0.0	41.341465	18
CGTTATT	620	0.0	41.008068	1
CGAGACA	110	0.0	40.909092	22
ACGGGTA	50	1.0804797E-9	40.500004	5
CGGGATA	145	0.0	40.34483	6
TAATACG	185	0.0	40.135136	4
CGATGAA	640	0.0	40.07813	19
GGTACGC	40	3.45608E-7	39.375004	8
CCAACGG	40	3.45608E-7	39.375004	2
TACGGCT	600	0.0	38.625004	7
GCTTACG	35	6.24538E-6	38.57143	1
ACGGGAG	450	0.0	38.5	5
CACAACG	170	0.0	38.382355	12
CGGGTAT	65	9.094947E-12	38.076927	6
GCGATTT	65	9.094947E-12	38.076927	9
CGAACAC	30	1.1395429E-4	37.500004	34