SRR2935850.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935850.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	427312
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	2120	0.4961246115250683	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	2014	0.47131838094881495	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	1888	0.4418317295091174	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1159	0.27123038903658214	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1151	0.2693582206912046	No Hit
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	542	0.12683940539933353	No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT	484	0.11326618489534579	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCCG	20	7.0283056E-4	45.000004	45
ATTACGG	20	7.0283056E-4	45.000004	2
CCGTGCC	20	7.0283056E-4	45.000004	21
TTGTACG	20	7.0283056E-4	45.000004	1
ACTACTC	20	7.0283056E-4	45.000004	10
ACCACGT	20	7.0283056E-4	45.000004	33
CGTCGAA	20	7.0283056E-4	45.000004	42
ACCCGTC	40	6.7975634E-9	45.000004	39
ACGTAAG	20	7.0283056E-4	45.000004	1
ATACCGG	20	7.0283056E-4	45.000004	2
TACAACG	40	6.7975634E-9	45.000004	1
TAATACG	110	0.0	45.0	4
CGCGGAT	25	3.8866783E-5	45.0	23
ACGGGTA	35	1.209537E-7	45.0	5
CCCGTCG	25	3.8866783E-5	45.0	40
GGCGAAC	55	1.8189894E-12	45.0	32
CGATCAA	25	3.8866783E-5	45.0	44
TCAACGG	35	1.209537E-7	45.0	2
CCGATCA	30	2.162289E-6	44.999996	10
TGCACGG	85	0.0	42.352943	2