SRR2935849.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935849.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	561349
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5434	0.9680252392005687	No Hit
CGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTG	1167	0.20789206001970256	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	1111	0.19791609141550087	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTT	1062	0.18918711888682443	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	875	0.155874509440651	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	797	0.1419794103133701	No Hit
CCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	777	0.1384165643832981	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	761	0.13556628763924047	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	732	0.13040016104063604	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	729	0.12986573415112523	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	712	0.126837315110564	No Hit
CTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGCT	683	0.12167118851195957	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT	644	0.11472363894831913	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	640	0.11401106976230474	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT	562	0.10011597063502384	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	35	1.2104465E-7	45.000004	4
TCGCAAC	20	7.030198E-4	45.000004	16
TTTCGCA	20	7.030198E-4	45.000004	14
TATTGCG	30	2.1635096E-6	45.000004	1
CGATAGT	20	7.030198E-4	45.000004	10
GCTACGA	120	0.0	43.125004	10
ACGGGTC	75	0.0	42.000004	5
CGTTTTT	2820	0.0	41.968082	1
CGTTATT	355	0.0	41.830986	1
CGTTAGG	70	0.0	41.785717	2
CGAATAT	130	0.0	41.538464	14
ACGTAGG	65	0.0	41.538464	2
TACGAAT	125	0.0	41.399998	12
CTACGAA	130	0.0	39.807693	11
CGAAAGG	120	0.0	39.375004	2
TTACGGG	165	0.0	38.181816	3
CGAATGG	65	9.094947E-12	38.076927	2
GCGTTAG	60	1.546141E-10	37.500004	1
TCGAAAG	30	1.1391776E-4	37.500004	1
TCACGAC	55	2.744855E-9	36.81818	25