Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935847.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 711890 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11068 | 1.554734579780584 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC | 4864 | 0.6832516259534478 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTT | 2831 | 0.3976737979182177 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC | 2142 | 0.3008891823174929 | No Hit |
CGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG | 1895 | 0.26619281068704437 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG | 1725 | 0.24231271685232267 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC | 1703 | 0.23922235176782933 | No Hit |
GCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC | 1695 | 0.23809858264619535 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCT | 1602 | 0.22503476660720054 | No Hit |
GAACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT | 1502 | 0.21098765258677604 | No Hit |
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1334 | 0.18738850103246288 | No Hit |
CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC | 1187 | 0.16673924342243887 | No Hit |
CGTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT | 1174 | 0.1649131185997837 | No Hit |
CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT | 947 | 0.13302616977342005 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTT | 846 | 0.11883858461279131 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC | 730 | 0.10254393234909887 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAACAC | 40 | 6.8084773E-9 | 45.000004 | 34 |
TTTCGCG | 20 | 7.031474E-4 | 45.000004 | 1 |
CTAGTCG | 25 | 3.889303E-5 | 45.000004 | 1 |
CGTTTTT | 5405 | 0.0 | 43.959297 | 1 |
CGTTATT | 675 | 0.0 | 43.333332 | 1 |
CGTAAGG | 100 | 0.0 | 42.750004 | 2 |
GCGCGAC | 95 | 0.0 | 42.63158 | 9 |
TTAACGG | 70 | 0.0 | 41.785713 | 2 |
CGGCGAA | 55 | 6.002665E-11 | 40.909092 | 31 |
TTGTGCG | 55 | 6.002665E-11 | 40.909092 | 1 |
GCGTTAG | 55 | 6.002665E-11 | 40.909092 | 1 |
TTGCACG | 50 | 1.0804797E-9 | 40.500004 | 1 |
AAGGGCG | 260 | 0.0 | 38.07692 | 5 |
ATTTACG | 30 | 1.1394853E-4 | 37.500004 | 1 |
CGACGGT | 30 | 1.1394853E-4 | 37.500004 | 28 |
TTCGGCG | 30 | 1.1394853E-4 | 37.500004 | 1 |
AGGGCGC | 120 | 0.0 | 37.500004 | 6 |
GCCGTTA | 30 | 1.1394853E-4 | 37.500004 | 29 |
GCGTAAG | 60 | 1.546141E-10 | 37.500004 | 1 |
TAGTACG | 60 | 1.546141E-10 | 37.500004 | 1 |