FastQCFastQC Report
Sat 14 Jan 2017
SRR2935847.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935847.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences711890
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT110681.554734579780584No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC48640.6832516259534478No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTT28310.3976737979182177No Hit
CGTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC21420.3008891823174929No Hit
CGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG18950.26619281068704437No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG17250.24231271685232267No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC17030.23922235176782933No Hit
GCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC16950.23809858264619535No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCT16020.22503476660720054No Hit
GAACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT15020.21098765258677604No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13340.18738850103246288No Hit
CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC11870.16673924342243887No Hit
CGTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT11740.1649131185997837No Hit
CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT9470.13302616977342005No Hit
GAATGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTT8460.11883858461279131No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC7300.10254393234909887No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACAC406.8084773E-945.00000434
TTTCGCG207.031474E-445.0000041
CTAGTCG253.889303E-545.0000041
CGTTTTT54050.043.9592971
CGTTATT6750.043.3333321
CGTAAGG1000.042.7500042
GCGCGAC950.042.631589
TTAACGG700.041.7857132
CGGCGAA556.002665E-1140.90909231
TTGTGCG556.002665E-1140.9090921
GCGTTAG556.002665E-1140.9090921
TTGCACG501.0804797E-940.5000041
AAGGGCG2600.038.076925
ATTTACG301.1394853E-437.5000041
CGACGGT301.1394853E-437.50000428
TTCGGCG301.1394853E-437.5000041
AGGGCGC1200.037.5000046
GCCGTTA301.1394853E-437.50000429
GCGTAAG601.546141E-1037.5000041
TAGTACG601.546141E-1037.5000041