SRR2935846.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935846.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	787186
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12270	1.558716745470575	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTT	3233	0.41070344238845713	No Hit
GAATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTC	3010	0.3823746865416814	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTC	2414	0.30666195791083684	No Hit
CGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTG	1994	0.25330735048641617	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCT	1986	0.25229107224976055	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1378	0.17505392626393254	No Hit
GCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGC	1350	0.1714969524356378	TruSeq Adapter, Index 22 (95% over 22bp)
CGTCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCT	1328	0.16870218728483485	No Hit
CCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGC	1173	0.14901179644963197	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCG	1076	0.13668942283018246	No Hit
GAACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCT	1029	0.13071878818983063	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGC	1020	0.12957547517359302	No Hit
CTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGCT	984	0.12500222310864267	TruSeq Adapter, Index 23 (95% over 22bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTC	889	0.11293391904835706	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCC	875	0.11115543213420971	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTGC	25	3.8896807E-5	45.000004	26
CGTTAGG	65	0.0	45.000004	2
GACGTAG	20	7.0319313E-4	45.0	1
CGTTATG	20	7.0319313E-4	45.0	1
GTATGCG	35	1.2112832E-7	45.0	1
GTAAGCG	20	7.0319313E-4	45.0	1
TTCGACG	20	7.0319313E-4	45.0	1
GCGTTAG	30	2.1646265E-6	44.999996	1
CGTTTTT	7145	0.0	43.80336	1
CGTTATT	1005	0.0	43.432835	1
TCGACGG	50	1.0804797E-9	40.500004	2
TAATACG	45	1.9270374E-8	40.0	4
GAGTACG	45	1.9270374E-8	40.0	1
ACGTAAG	40	3.456371E-7	39.375	1
TAGTGCG	40	3.456371E-7	39.375	1
CGTAAGG	120	0.0	39.374996	2
TACGGGA	475	0.0	39.31579	4
TGTACGG	115	0.0	39.130436	2
TTGTGCG	70	0.0	38.571426	1
TACAACG	35	6.245782E-6	38.571426	1