SRR2935845.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935845.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	516491
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4967	0.9616818105252559	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTT	1332	0.2578941356190137	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	1170	0.22652863263832282	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1166	0.2257541757746021	No Hit
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	852	0.16495931197252228	No Hit
TGAATCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTT	836	0.1618614845176392	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	835	0.16166787030170904	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC	834	0.16147425608577884	No Hit
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	780	0.15101908842554854	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	763	0.14772764675473532	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCT	747	0.14462981929985227	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCT	633	0.12255779868381056	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	560	0.10842396092090666	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGAA	20	7.0296763E-4	45.0	18
TAAACGG	40	6.8030204E-9	45.0	2
TACGACG	25	3.8878126E-5	45.0	1
ATAACGG	25	3.8878126E-5	45.0	2
TACGCGG	30	2.1631713E-6	44.999996	2
CGTTTTT	2505	0.0	43.29341	1
CACGACC	140	0.0	41.785713	27
ACGGGTT	70	0.0	41.785713	5
CGTTATT	260	0.0	40.67308	1
TAACGGG	150	0.0	40.500004	3
GACACGA	145	0.0	40.344826	25
ACGGGTA	45	1.9248546E-8	40.0	5
GCGTATG	45	1.9248546E-8	40.0	1
TTGTACG	40	3.4532968E-7	39.375	1
GCGATGT	80	0.0	39.375	9
ACGACCA	145	0.0	38.793102	28
CACGTGA	140	0.0	38.571426	43
ACGAATG	35	6.2416093E-6	38.571426	1
AACACGT	140	0.0	38.571426	41
CTACGAA	65	9.094947E-12	38.076927	11