##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935844.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 205570 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.912720727732644 33.0 31.0 34.0 30.0 34.0 2 32.011431629128765 33.0 31.0 34.0 30.0 34.0 3 31.976484895655982 33.0 31.0 34.0 30.0 34.0 4 35.63928588801868 37.0 35.0 37.0 33.0 37.0 5 31.949365179744127 37.0 35.0 37.0 0.0 37.0 6 33.739592352969794 37.0 35.0 37.0 17.0 37.0 7 35.40566230481101 37.0 35.0 37.0 32.0 37.0 8 35.60603200856156 37.0 35.0 37.0 33.0 37.0 9 37.53344846037846 39.0 37.0 39.0 35.0 39.0 10 37.18150508342657 39.0 37.0 39.0 34.0 39.0 11 37.18328549885684 39.0 37.0 39.0 34.0 39.0 12 37.02627328890402 39.0 37.0 39.0 33.0 39.0 13 36.852809262051856 39.0 35.0 39.0 33.0 39.0 14 37.97458286714988 40.0 37.0 41.0 33.0 41.0 15 38.14377097825558 40.0 37.0 41.0 33.0 41.0 16 38.162499391934624 40.0 37.0 41.0 34.0 41.0 17 38.152546577808046 40.0 37.0 41.0 34.0 41.0 18 38.108182127742374 40.0 37.0 41.0 34.0 41.0 19 37.987420343435325 40.0 36.0 41.0 34.0 41.0 20 38.01918081432115 40.0 36.0 41.0 34.0 41.0 21 37.98817434450552 40.0 36.0 41.0 34.0 41.0 22 38.04694264727343 40.0 36.0 41.0 34.0 41.0 23 38.05640900909666 40.0 36.0 41.0 34.0 41.0 24 38.01370822590845 40.0 36.0 41.0 34.0 41.0 25 37.775672520309385 40.0 36.0 41.0 33.0 41.0 26 37.81337257381914 40.0 36.0 41.0 33.0 41.0 27 37.7788539183733 40.0 36.0 41.0 33.0 41.0 28 37.728627718052245 40.0 36.0 41.0 33.0 41.0 29 37.749491657343 40.0 36.0 41.0 33.0 41.0 30 37.6301162621005 40.0 36.0 41.0 33.0 41.0 31 37.628131536702824 40.0 36.0 41.0 33.0 41.0 32 37.548966288855375 40.0 36.0 41.0 33.0 41.0 33 37.47763292309189 40.0 36.0 41.0 33.0 41.0 34 37.45154935058618 40.0 36.0 41.0 33.0 41.0 35 37.44224838254609 40.0 35.0 41.0 33.0 41.0 36 37.341372768400056 40.0 35.0 41.0 33.0 41.0 37 37.278095052780074 40.0 35.0 41.0 33.0 41.0 38 37.17025830617308 40.0 35.0 41.0 32.0 41.0 39 37.12595223038381 40.0 35.0 41.0 32.0 41.0 40 37.03333171182565 39.0 35.0 41.0 32.0 41.0 41 36.91635452643868 39.0 35.0 41.0 31.0 41.0 42 36.93459648781437 39.0 35.0 41.0 32.0 41.0 43 36.8982293136158 39.0 35.0 41.0 32.0 41.0 44 36.878085323734005 39.0 35.0 41.0 32.0 41.0 45 36.87623194045824 39.0 35.0 41.0 32.0 41.0 46 36.76501435034295 39.0 35.0 41.0 31.0 41.0 47 36.63753465972661 39.0 35.0 41.0 31.0 41.0 48 36.674183976261126 39.0 35.0 41.0 31.0 41.0 49 36.675054725884124 39.0 35.0 41.0 31.0 41.0 50 36.54820255873911 39.0 35.0 41.0 31.0 41.0 51 35.548737656272806 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 7.0 10 9.0 11 5.0 12 3.0 13 1.0 14 6.0 15 6.0 16 10.0 17 21.0 18 50.0 19 110.0 20 169.0 21 317.0 22 514.0 23 709.0 24 896.0 25 1179.0 26 1467.0 27 1708.0 28 1959.0 29 2231.0 30 2742.0 31 3734.0 32 5349.0 33 7774.0 34 13500.0 35 18521.0 36 14992.0 37 23349.0 38 38548.0 39 65631.0 40 50.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.68808678309092 21.137811937539524 22.116553971883057 11.057547307486502 2 31.797927713187725 27.15765919151627 23.593909617162037 17.450503478133967 3 31.77457800262684 26.92464853821083 25.30476236804981 15.996011091112516 4 29.115629712506692 24.599892980493262 27.959819039743156 18.324658267256897 5 24.122683270905288 35.797052099041686 21.380551636912003 18.699712993141024 6 23.83324415041105 36.14291968672472 24.302184170842047 15.721651992022181 7 75.47988519725641 6.2236707690810915 13.009680400836698 5.286763632825801 8 74.32504742909958 8.721603346791847 10.257819720776377 6.695529503332198 9 68.09845794619838 8.138347035073211 12.957143552074719 10.806051466653695 10 40.06469815634577 23.481539135087804 21.245804348883592 15.207958359682832 11 31.238507564333318 24.302184170842047 24.703993773410517 19.755314491414115 12 28.18991097922849 20.139125358758577 30.190202850610497 21.48076081140244 13 24.074038040570123 27.267597412073748 31.323636717419856 17.334727829936273 14 18.86607968088729 30.677628058568857 28.54648051758525 21.909811742958603 15 17.40429050931556 25.98530914043878 37.49817580386243 19.112224546383228 16 18.775113100160528 24.264727343483973 32.65359731478328 24.306562241572212 17 18.126185727489418 26.25529016879895 28.943425597120203 26.67509850659143 18 19.98783869241621 24.95403025733327 31.978401517731186 23.079729532519337 19 20.982633652770346 26.840978742034345 27.795884613513643 24.380502991681666 20 23.521914676265993 25.709977136741742 30.296735905044507 20.471372281947755 21 22.003210585202122 28.940506883300092 28.954127547793938 20.102154983703848 22 18.669066498029867 25.6248479836552 29.133141995427348 26.57294352288758 23 19.592352969791314 27.976358418057107 28.474972028992557 23.956316583159023 24 21.261857274894197 25.407890256360368 29.414311426764606 23.915941041980833 25 18.04202947900958 28.774140195553827 28.58296444033662 24.600865885099964 26 17.3566181835871 26.72325728462324 29.133628447730697 26.786496084058957 27 20.25490100695627 27.601303692172984 29.770394512818015 22.37340078805273 28 16.198861701610156 26.34674320182906 33.276742715376756 24.177652381184025 29 17.872744077443205 22.77861555674466 31.4681130515153 27.88052731429683 30 18.980882424478278 25.68857323539427 32.91579510628983 22.41474923383762 31 21.055601498273095 24.83144427688865 29.51257479204164 24.600379432796615 32 22.32816072384103 25.766405603930536 26.630344894683077 25.275088777545363 33 19.618134941868952 23.862917740915503 30.627523471323638 25.891423845891907 34 18.1636425548475 23.22226005740137 32.14914627620762 26.46495111154351 35 19.80590553096269 22.365617551199104 29.622513012599118 28.20596390523909 36 21.435034294887387 22.290217444179596 31.283747628545022 24.991000632387994 37 18.800408619934817 23.519968867052583 34.23699956219293 23.442622950819672 38 18.563019895899206 24.950625091209808 30.00340516612346 26.48294984676752 39 19.89103468404923 23.23588072189522 31.324123169723205 25.548961424332344 40 22.4823661040035 21.557620275332003 32.382643381816415 23.57737023884808 41 18.773653743250474 22.65554312399669 30.144962786398793 28.425840346354043 42 20.95733813299606 21.52405506640074 30.70146422143309 26.81714257917011 43 22.456584131925865 21.3221773605098 29.570462616140485 26.650775891423844 44 18.91034684049229 22.592790776864327 31.05997956900326 27.436882813640125 45 19.09568516806927 22.32280974850416 29.837524930680548 28.743980152746023 46 23.626015469183244 23.70676655153962 29.713966045629224 22.953251933647906 47 18.3849783528725 22.212871527946685 34.85625334435959 24.54589677482123 48 20.188743493700443 21.435520747190736 30.826482463394466 27.549253295714355 49 20.0291871382011 19.508196721311474 34.95986768497349 25.502748455513935 50 20.178041543026705 20.553096268910835 33.03594882521769 26.232913362844773 51 18.893807462178334 21.18743007248139 28.731818845162234 31.18694362017804 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 85.0 1 164.0 2 243.0 3 557.0 4 871.0 5 596.0 6 321.0 7 315.0 8 309.0 9 333.0 10 357.0 11 354.0 12 351.0 13 351.0 14 351.0 15 355.5 16 360.0 17 336.0 18 312.0 19 354.5 20 397.0 21 478.0 22 559.0 23 585.0 24 611.0 25 861.0 26 1332.5 27 1554.0 28 1918.5 29 2283.0 30 2691.5 31 3100.0 32 3391.0 33 3682.0 34 4204.0 35 4726.0 36 4946.0 37 5166.0 38 5889.0 39 6612.0 40 7861.0 41 9110.0 42 10846.0 43 12582.0 44 14703.0 45 16824.0 46 21633.5 47 26443.0 48 25654.0 49 24865.0 50 24589.5 51 24314.0 52 19920.5 53 15527.0 54 13249.5 55 10972.0 56 9670.5 57 8369.0 58 7348.0 59 6327.0 60 5918.0 61 5509.0 62 4646.0 63 3783.0 64 3337.5 65 2892.0 66 2334.0 67 1776.0 68 1484.0 69 1192.0 70 954.0 71 716.0 72 573.0 73 430.0 74 374.0 75 210.5 76 103.0 77 67.5 78 32.0 79 27.0 80 22.0 81 37.5 82 53.0 83 49.5 84 46.0 85 24.0 86 2.0 87 1.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 205570.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.95738677822639 #Duplication Level Percentage of deduplicated Percentage of total 1 73.10615284061053 27.749185192391884 2 11.26504248420459 8.551831492922119 3 4.238167860667188 4.826093301551783 4 2.0633354265721717 3.132752833584667 5 1.271322200720245 2.4128034246242156 6 0.9342680285534866 2.1277423748601447 7 0.6600110215432724 1.7536605535827212 8 0.5408245652257494 1.6422629761151921 9 0.469056376475413 1.6023738872403561 >10 5.340322187904497 37.98170939339398 >50 0.07048661395122327 1.7648489565598093 >100 0.033320944776941905 2.6034927275380646 >500 0.0025631495982263003 0.7321107165442429 >1k 0.005126299196452601 3.1191321690908205 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC 1661 0.8079972758671012 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC 1645 0.8002140390134747 No Hit GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC 1564 0.7608114024419905 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG 1542 0.7501094517682542 No Hit CCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC 893 0.43440190689302915 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGCT 612 0.2977088096512137 TruSeq Adapter, Index 27 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 451 0.21938998881159702 No Hit TCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC 384 0.18679768448703604 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCT 383 0.1863112321836844 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTTGCT 267 0.12988276499489226 No Hit GAACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCT 253 0.12307243274796906 TruSeq Adapter, Index 27 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC 251 0.12209952814126573 TruSeq Adapter, Index 27 (95% over 23bp) GAATGATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTC 235 0.11431629128763925 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTA 219 0.10653305443401274 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC 217 0.10556014982730944 No Hit CGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTG 209 0.10166853140049618 TruSeq Adapter, Index 27 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3118159264484117 0.0 2 0.0 0.0 0.0 1.8859755800943718 0.0 3 0.0 0.0 0.0 2.4570705842292164 0.0 4 0.0 0.0 0.0 3.196478085323734 0.0 5 0.0 0.0 0.0 5.798511455951744 0.0 6 0.0 0.0 0.0 6.927567252030938 0.0 7 0.0 0.0 0.0 8.16169674563409 0.0 8 0.0 0.0 0.0 9.929950868317361 0.0 9 0.0 0.0 0.0 10.450454832903635 0.0 10 0.0 0.0 0.0 12.570413970910153 0.0 11 0.0 0.0 0.0 14.56681422386535 0.0 12 0.0 0.0 0.0 16.938269202704674 0.0 13 0.0 0.0 0.0 17.660164420878534 0.0 14 0.0 0.0 0.0 17.934523519968867 0.0 15 0.0 0.0 0.0 18.52507661623778 0.0 16 0.0 0.0 0.0 19.55343678552318 0.0 17 0.0 0.0 0.0 20.78659337451963 0.0 18 0.0 0.0 0.0 22.07666488300822 0.0 19 0.0 0.0 0.0 22.961035170501532 0.0 20 0.0 0.0 0.0 23.663472296541325 0.0 21 0.0 0.0 0.0 24.533249014934086 0.0 22 0.0 0.0 0.0 25.401566376416792 0.0 23 0.0 0.0 0.0 26.304421851437468 0.0 24 0.0 0.0 0.0 27.001021549837038 0.0 25 0.0 0.0 0.0 27.607627572116552 0.0 26 0.0 0.0 0.0 28.16802062557766 0.0 27 0.0 0.0 0.0 28.799922167631465 0.0 28 0.0 0.0 0.0 29.337451962835043 0.0 29 0.0 0.0 0.0 29.883737899498954 0.0 30 4.8645230335165636E-4 0.0 0.0 30.536070438293525 0.0 31 9.729046067033127E-4 0.0 0.0 31.10716544242837 0.0 32 0.001459356910054969 0.0 0.0 31.677773994259862 0.0 33 0.001459356910054969 0.0 0.0 32.23427542929416 0.0 34 0.001459356910054969 0.0 0.0 32.78639879359829 0.0 35 0.001459356910054969 0.0 0.0 33.39835579121467 0.0 36 0.001459356910054969 0.0 0.0 33.95874884467578 0.0 37 0.001459356910054969 0.0 0.0 34.50600768594639 0.0 38 0.001459356910054969 0.0 0.0 35.03380843508294 0.0 39 0.001459356910054969 0.0 0.0 35.59274213163399 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 80 0.0 45.000004 4 TCGTTCA 20 7.019759E-4 45.000004 16 ACCGGGT 20 7.019759E-4 45.000004 4 TGCCCCG 20 7.019759E-4 45.000004 41 CCCTCTG 20 7.019759E-4 45.000004 34 CTCGTTC 20 7.019759E-4 45.000004 15 GGTAATC 20 7.019759E-4 45.000004 8 GTCGAGG 30 2.1567794E-6 45.000004 1 CGCGGAT 30 2.1567794E-6 45.000004 4 CGTGCGG 30 2.1567794E-6 45.000004 2 AGCTTAG 20 7.019759E-4 45.000004 1 ATTACGG 30 2.1567794E-6 45.000004 2 TGAACGC 20 7.019759E-4 45.000004 16 TTGTAGT 20 7.019759E-4 45.000004 14 CGTTCAT 20 7.019759E-4 45.000004 17 CGAGGTT 20 7.019759E-4 45.000004 36 CGGGCTT 20 7.019759E-4 45.000004 6 GAACGCG 20 7.019759E-4 45.000004 17 GGACGAT 20 7.019759E-4 45.000004 8 TCCCCGA 20 7.019759E-4 45.000004 39 >>END_MODULE