SRR2935842.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935842.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	332407
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1237	0.37213416083295475	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	797	0.23976631057709374	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	502	0.1510196837010051	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	493	0.14831215949122611	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC	486	0.1462063073280647	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC	451	0.13567704651225757	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG	378	0.11371601681071698	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	343	0.10318675599490985	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	30	2.1608303E-6	45.000004	2
TCACGAC	25	3.884803E-5	45.0	25
CTCACGT	20	7.026045E-4	45.0	45
CTCACGA	25	3.884803E-5	45.0	24
TCGCACG	20	7.026045E-4	45.0	13
TCACCCG	20	7.026045E-4	45.0	26
TACTCGC	20	7.026045E-4	45.0	45
TCTCCGT	20	7.026045E-4	45.0	41
CATCGGG	20	7.026045E-4	45.0	3
GCGGATG	20	7.026045E-4	45.0	1
CGGTCTA	25	3.884803E-5	45.0	31
GCGCTAG	20	7.026045E-4	45.0	1
GCTCACG	20	7.026045E-4	45.0	44
CGGACGG	45	3.8380676E-10	45.0	2
CGCACGG	65	0.0	41.538464	2
TAGACGG	50	1.0768417E-9	40.5	2
ACGGGCG	50	1.0768417E-9	40.5	5
CGTTAGG	45	1.9212166E-8	40.0	2
AAGGGCG	135	0.0	40.0	5
GCCAGTA	45	1.9212166E-8	40.0	25