##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935841.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 662341 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.125009624951495 33.0 31.0 34.0 30.0 34.0 2 32.2532577629952 34.0 31.0 34.0 30.0 34.0 3 32.163737410185995 34.0 31.0 34.0 30.0 34.0 4 35.809053040654284 37.0 35.0 37.0 35.0 37.0 5 32.185357693393584 37.0 35.0 37.0 0.0 37.0 6 33.94241636860771 37.0 35.0 37.0 17.0 37.0 7 35.5767738974335 37.0 35.0 37.0 32.0 37.0 8 35.824489198162276 37.0 35.0 37.0 35.0 37.0 9 37.77709971147792 39.0 38.0 39.0 35.0 39.0 10 37.39796419065104 39.0 37.0 39.0 34.0 39.0 11 37.39406589656989 39.0 37.0 39.0 35.0 39.0 12 37.36707979726455 39.0 37.0 39.0 35.0 39.0 13 37.35547701259623 39.0 37.0 39.0 34.0 39.0 14 38.58487697424741 40.0 38.0 41.0 35.0 41.0 15 38.69865371462736 40.0 38.0 41.0 35.0 41.0 16 38.627353583728016 40.0 38.0 41.0 35.0 41.0 17 38.61130595871311 40.0 38.0 41.0 35.0 41.0 18 38.48759173899849 40.0 38.0 41.0 34.0 41.0 19 38.30568694977361 40.0 37.0 41.0 34.0 41.0 20 38.36146335497878 40.0 37.0 41.0 34.0 41.0 21 38.258267267162985 40.0 37.0 41.0 34.0 41.0 22 38.334271923374814 40.0 37.0 41.0 34.0 41.0 23 38.34349526905325 40.0 37.0 41.0 34.0 41.0 24 38.31695154006773 40.0 37.0 41.0 34.0 41.0 25 38.05166522984384 40.0 36.0 41.0 34.0 41.0 26 38.11847975589613 40.0 37.0 41.0 34.0 41.0 27 38.10535811613655 40.0 37.0 41.0 34.0 41.0 28 38.03261009057268 40.0 36.0 41.0 34.0 41.0 29 38.001707579630434 40.0 36.0 41.0 34.0 41.0 30 37.8197861826461 40.0 36.0 41.0 33.0 41.0 31 37.764174345239084 40.0 36.0 41.0 33.0 41.0 32 37.61297277384308 40.0 36.0 41.0 33.0 41.0 33 37.47335586955964 40.0 36.0 41.0 33.0 41.0 34 37.30239559381044 40.0 36.0 41.0 33.0 41.0 35 37.240996707134244 40.0 36.0 41.0 32.0 41.0 36 37.13518565210367 40.0 36.0 41.0 32.0 41.0 37 37.08843329946357 40.0 36.0 41.0 32.0 41.0 38 36.952541062685235 40.0 35.0 41.0 31.0 41.0 39 36.860547663514716 40.0 35.0 41.0 31.0 41.0 40 36.76902985018291 40.0 35.0 41.0 31.0 41.0 41 36.63610134356774 39.0 35.0 41.0 31.0 41.0 42 36.629110986636796 39.0 35.0 41.0 31.0 41.0 43 36.55286174342219 39.0 35.0 41.0 31.0 41.0 44 36.49109295664922 39.0 35.0 41.0 31.0 41.0 45 36.42578369752137 39.0 35.0 41.0 31.0 41.0 46 36.28623322427571 39.0 35.0 41.0 30.0 41.0 47 36.20893920201225 39.0 35.0 41.0 30.0 41.0 48 36.157447598744454 39.0 35.0 41.0 30.0 41.0 49 36.11569720129057 39.0 35.0 41.0 30.0 41.0 50 36.013905224046226 39.0 35.0 41.0 30.0 41.0 51 35.0307726684593 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 12.0 9 30.0 10 34.0 11 19.0 12 14.0 13 17.0 14 21.0 15 35.0 16 51.0 17 78.0 18 137.0 19 286.0 20 511.0 21 774.0 22 1263.0 23 2048.0 24 3197.0 25 5065.0 26 6781.0 27 7769.0 28 7870.0 29 7893.0 30 9238.0 31 11397.0 32 14415.0 33 20992.0 34 35252.0 35 45984.0 36 50098.0 37 78708.0 38 132521.0 39 219647.0 40 182.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.939300149016894 19.05725298599966 21.863058454783864 15.140388410199579 2 35.40110003759393 22.980458706315932 23.073764118482774 18.544677137607366 3 31.53330384197868 23.746982294618633 27.974864910974862 16.74484895242783 4 27.136927957049316 24.726538142739162 28.381302078536585 19.755231821674936 5 22.28338574842868 35.788966710501086 24.423220063381248 17.504427477688985 6 24.400875077943233 33.209630688723784 26.757516143497078 15.631978089835899 7 78.64045861572815 5.208797281158799 11.588743562605968 4.56200054050708 8 79.53259725730402 4.939751578114596 11.059107015872488 4.468544148708898 9 73.365381276412 6.823524438318026 13.159686626677194 6.65140765859278 10 35.13733862164655 30.073330806940834 19.767310192181974 15.02202037923064 11 28.073454610238535 25.28788041205361 27.776779634659487 18.86188534304837 12 23.708633468258796 23.821566232499574 31.731087159031375 20.738713140210255 13 23.471595447058238 24.01195154761671 33.91002519850047 18.606427806824584 14 20.509526059839267 26.774274882575593 32.1068754614315 20.609323596153644 15 19.299424314665707 25.43357575629472 34.64710775869227 20.6198921703473 16 22.967927396914884 26.784692477137913 30.864917014045634 19.382463111901576 17 23.043115253321176 26.019980644411262 29.96553135016555 20.971372752102013 18 24.921301867165102 24.223775970383834 30.349472552657918 20.505449609793143 19 22.621127183731645 26.623748190131668 28.81989790757329 21.9352267185634 20 24.727745979789866 26.592193447182037 29.074751525271726 19.605309047756368 21 24.067964990843084 27.12681232174967 30.06834847910668 18.73687420830056 22 23.879391431302004 23.382668444200196 30.46512295026278 22.272817174235023 23 21.570459929250944 27.158669023961977 30.427076083165623 20.843794963621455 24 21.68943187874524 24.802178938039468 31.523641145573052 21.98474803764224 25 21.78938039469095 27.378344387558673 29.399508712279626 21.432766505470745 26 22.016151800960532 25.60659841380799 30.055817169705634 22.32143261552584 27 22.463655428246177 24.792818200896516 30.525967741691968 22.21755862916534 28 19.570432752917306 26.440458917687415 30.450326946391666 23.538781383003617 29 21.01259019145727 25.486720586525674 30.59481445358207 22.90587476843499 30 21.688827960219886 23.550708773879318 32.51754005867068 22.24292320723011 31 22.461390733776106 24.61541713407444 28.956685453565463 23.966506678583993 32 21.382490288235214 24.995583845783365 29.951339264819783 23.670586601161638 33 20.511035856152645 24.369924253518956 28.979483377897488 26.139556512430907 34 19.412960997431835 24.745108637393727 31.2301367422521 24.61179362292233 35 19.388955236049103 25.63573748265621 30.757268536901687 24.218038744392995 36 20.368360104538297 27.951765027380155 28.686733872733228 22.99314099534832 37 20.60147265532407 26.09984886938903 28.634494920290305 24.664183554996598 38 19.771386642228098 27.460477307006514 28.286788829319036 24.481347221446352 39 20.89195746601826 25.69114700735724 27.47587722940298 25.941018297221525 40 22.825855563825883 23.65956508807397 30.402919342151552 23.111660005948597 41 19.88824487688366 25.864018685239177 29.358744211818383 24.888992226058782 42 21.493007378374585 25.88032448542367 30.050985821502824 22.575682314698923 43 21.750427649805765 24.665391392047297 29.68606805255903 23.898112905587908 44 22.101153333403794 24.44299839508652 28.505709294759047 24.950138976750647 45 22.07548679607634 23.30023356548968 28.664539866926553 25.95973977150743 46 22.11217484649146 24.40404565020133 28.103952495768798 25.379827007538413 47 20.514810346936095 25.229602274357166 30.75757049616436 23.498016882542377 48 20.742185671731026 25.18385544606177 29.956472572285275 24.11748630992193 49 22.321734574788515 23.551614651667343 30.228537867956234 23.898112905587908 50 19.830268698449892 24.43469451536293 31.09183939994655 24.643197386240622 51 20.429506855230162 22.808190946959346 29.270572107117026 27.491730090693466 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 207.0 1 517.0 2 827.0 3 5095.0 4 9363.0 5 6075.0 6 2787.0 7 2712.0 8 2637.0 9 2630.0 10 2623.0 11 2610.5 12 2598.0 13 2600.5 14 2603.0 15 2524.0 16 2445.0 17 2415.0 18 2385.0 19 2464.0 20 2543.0 21 2548.5 22 2554.0 23 2821.0 24 3088.0 25 3441.0 26 4615.5 27 5437.0 28 6383.5 29 7330.0 30 8626.0 31 9922.0 32 11376.0 33 12830.0 34 15081.0 35 17332.0 36 18179.5 37 19027.0 38 20899.0 39 22771.0 40 25073.0 41 27375.0 42 30542.5 43 33710.0 44 37447.5 45 41185.0 46 49789.0 47 58393.0 48 61193.5 49 63994.0 50 64239.5 51 64485.0 52 58424.0 53 52363.0 54 48300.5 55 44238.0 56 39886.0 57 35534.0 58 32042.0 59 28550.0 60 25141.0 61 21732.0 62 19864.5 63 17997.0 64 15416.0 65 12835.0 66 11013.0 67 9191.0 68 7611.5 69 6032.0 70 4846.5 71 3661.0 72 3197.5 73 2734.0 74 2226.5 75 1321.0 76 923.0 77 628.5 78 334.0 79 240.5 80 147.0 81 112.0 82 77.0 83 45.5 84 14.0 85 10.5 86 7.0 87 6.0 88 5.0 89 3.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 662341.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.015901773310155 #Duplication Level Percentage of deduplicated Percentage of total 1 71.3276563592846 26.402575215157004 2 9.609126887179405 7.113809939662128 3 4.001795230985481 4.443901775611788 4 2.3926368827572624 3.5426244732536736 5 1.7505727299401967 3.2399514109250864 6 1.390587772427387 3.0884316234802998 7 1.2067519888036335 3.1268309157611385 8 1.0416220596331875 3.084526387543607 9 0.9489722028038775 3.1614355660131084 >10 6.250361991634125 36.871164911805856 >50 0.04306348731498345 1.099423514655772 >100 0.031469471347482375 2.01967149021035 >500 0.00248443194848545 0.7131768569438232 >1k 0.00248443194848545 1.2807448563555957 >5k 4.140719914142417E-4 0.8117310626207797 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5296 0.7995881275657101 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT 1674 0.2527399028597052 No Hit GAATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC 1634 0.24670071760618775 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC 1457 0.21997732285937302 No Hit CGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG 1313 0.1982362559467102 TruSeq Adapter, Index 16 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 1218 0.1838931909696063 TruSeq Adapter, Index 13 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 1060 0.16003840921821239 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT 880 0.13286207557738383 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGC 813 0.12274644027774213 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCG 808 0.12199154212105245 No Hit CGTCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT 771 0.1164052957615488 TruSeq Adapter, Index 16 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT 742 0.11202688645274865 TruSeq Adapter, Index 16 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.019592626758724E-4 0.0 0.0 0.11746215318091437 0.0 2 3.019592626758724E-4 0.0 0.0 0.5527364303281844 0.0 3 3.019592626758724E-4 0.0 0.0 0.9162953825899348 0.0 4 3.019592626758724E-4 0.0 0.0 1.3494559448984738 0.0 5 3.019592626758724E-4 0.0 0.0 2.6184397462938276 0.0 6 3.019592626758724E-4 0.0 0.0 3.8664373789332083 0.0 7 3.019592626758724E-4 0.0 0.0 4.78077002631575 0.0 8 3.019592626758724E-4 0.0 0.0 6.0423558257755445 0.0 9 3.019592626758724E-4 0.0 0.0 6.658352721634325 0.0 10 3.019592626758724E-4 0.0 0.0 7.7745451361156865 0.0 11 3.019592626758724E-4 0.0 0.0 8.829741779536523 0.0 12 3.019592626758724E-4 0.0 0.0 9.820319140744722 0.0 13 3.019592626758724E-4 0.0 0.0 10.259216929044102 0.0 14 3.019592626758724E-4 0.0 0.0 10.488705968677765 0.0 15 3.019592626758724E-4 0.0 0.0 10.786437801676175 0.0 16 3.019592626758724E-4 0.0 0.0 11.287841157349462 0.0 17 3.019592626758724E-4 0.0 0.0 11.880587189982199 0.0 18 3.019592626758724E-4 0.0 0.0 12.503982087776539 0.0 19 3.019592626758724E-4 0.0 0.0 12.91645844059178 0.0 20 3.019592626758724E-4 0.0 0.0 13.322593648890829 0.0 21 3.019592626758724E-4 0.0 0.0 13.793046180139838 0.0 22 3.019592626758724E-4 0.0 0.0 14.332647382541621 0.0 23 3.019592626758724E-4 0.0 0.0 14.848846742086025 0.0 24 3.019592626758724E-4 0.0 0.0 15.262832891214646 0.0 25 3.019592626758724E-4 0.0 0.0 15.646925073338355 0.0 26 3.019592626758724E-4 0.0 0.0 16.003840921821237 0.0 27 4.529388940138086E-4 0.0 0.0 16.40016245408332 0.0 28 4.529388940138086E-4 0.0 0.0 16.76885471381056 0.0 29 4.529388940138086E-4 0.0 0.0 17.176952657317003 0.0 30 4.529388940138086E-4 0.0 0.0 17.67020311289804 0.0 31 6.039185253517448E-4 0.0 0.0 18.10759110488404 0.0 32 6.039185253517448E-4 0.0 0.0 18.554490813644332 0.0 33 6.039185253517448E-4 0.0 0.0 18.990369009316954 0.0 34 6.039185253517448E-4 0.0 0.0 19.417641366003313 0.0 35 6.039185253517448E-4 0.0 0.0 19.882054711998805 0.0 36 6.039185253517448E-4 0.0 0.0 20.285623266565107 0.0 37 6.039185253517448E-4 0.0 0.0 20.675452674679658 0.0 38 6.039185253517448E-4 0.0 0.0 21.132166059476916 0.0 39 6.039185253517448E-4 0.0 0.0 21.663312402523776 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAACG 35 1.210883E-7 45.0 1 CACGACG 35 1.210883E-7 45.0 26 TATCGCC 20 7.031119E-4 45.0 42 GTACGAG 35 1.210883E-7 45.0 1 CGAACGG 50 2.1827873E-11 44.999996 2 GCGATTA 25 3.8890103E-5 44.999996 9 CGTACTC 25 3.8890103E-5 44.999996 31 CGTTATT 400 0.0 42.749996 1 CGTTTTT 2950 0.0 42.101696 1 CGTTCTG 190 0.0 39.07895 1 TGCGATG 35 6.2442814E-6 38.571426 1 TGCACGG 165 0.0 38.181816 2 AACGAGC 470 0.0 37.81915 15 GGTAATC 30 1.13939954E-4 37.500004 8 CGTATGG 30 1.13939954E-4 37.500004 2 TGTTACG 30 1.13939954E-4 37.500004 1 GCTAACG 60 1.546141E-10 37.500004 1 CGATCGG 30 1.13939954E-4 37.500004 2 CGCACGG 115 0.0 37.173912 2 ACAACGA 470 0.0 36.861702 13 >>END_MODULE