##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935840.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 703271 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.993370976479905 33.0 31.0 34.0 30.0 34.0 2 32.141021028877915 33.0 31.0 34.0 30.0 34.0 3 31.965610696303415 33.0 31.0 34.0 30.0 34.0 4 35.694848785176696 37.0 35.0 37.0 33.0 37.0 5 31.864722134141747 37.0 35.0 37.0 0.0 37.0 6 33.73237485976245 37.0 35.0 37.0 17.0 37.0 7 35.460801028337585 37.0 35.0 37.0 32.0 37.0 8 35.709870021655945 37.0 35.0 37.0 35.0 37.0 9 37.69679398126753 39.0 37.0 39.0 35.0 39.0 10 37.377805995128476 39.0 37.0 39.0 34.0 39.0 11 37.34576571478136 39.0 37.0 39.0 34.0 39.0 12 37.39904105245346 39.0 37.0 39.0 35.0 39.0 13 37.399614089021156 39.0 37.0 39.0 34.0 39.0 14 38.673795734503486 40.0 38.0 41.0 35.0 41.0 15 38.75294018948599 40.0 38.0 41.0 35.0 41.0 16 38.70540659290658 40.0 38.0 41.0 35.0 41.0 17 38.6715206513563 40.0 38.0 41.0 34.0 41.0 18 38.432281439160725 40.0 38.0 41.0 34.0 41.0 19 38.16946241207159 40.0 37.0 41.0 34.0 41.0 20 38.03909019424944 40.0 36.0 41.0 34.0 41.0 21 38.00456438556403 40.0 36.0 41.0 34.0 41.0 22 38.066816348178726 40.0 36.0 41.0 34.0 41.0 23 38.0660982750604 40.0 36.0 41.0 34.0 41.0 24 38.01686547575543 40.0 35.0 41.0 34.0 41.0 25 37.79607576595651 40.0 35.0 41.0 34.0 41.0 26 37.79700144041202 40.0 35.0 41.0 34.0 41.0 27 37.78888081550355 40.0 35.0 41.0 34.0 41.0 28 37.705430765665014 40.0 35.0 41.0 33.0 41.0 29 37.6199075463086 40.0 35.0 41.0 33.0 41.0 30 37.37874020114579 40.0 35.0 41.0 33.0 41.0 31 37.21792879274135 40.0 35.0 41.0 33.0 41.0 32 36.87649284557447 40.0 35.0 41.0 31.0 41.0 33 36.47461647074883 40.0 35.0 41.0 30.0 41.0 34 36.122951180981445 40.0 35.0 41.0 27.0 41.0 35 35.95640087533824 40.0 35.0 41.0 25.0 41.0 36 35.780505665668 40.0 35.0 41.0 24.0 41.0 37 35.693765276827854 40.0 35.0 41.0 23.0 41.0 38 35.55896802228444 40.0 35.0 41.0 23.0 41.0 39 35.45744101491459 39.0 35.0 41.0 22.0 41.0 40 35.367870991410136 39.0 35.0 41.0 22.0 41.0 41 35.26235263504396 39.0 35.0 41.0 21.0 41.0 42 35.250871996712505 39.0 35.0 41.0 21.0 41.0 43 35.188221894547056 39.0 35.0 41.0 21.0 41.0 44 35.15029625848357 39.0 35.0 41.0 20.0 41.0 45 35.16171148817455 39.0 35.0 41.0 20.0 41.0 46 35.043569264195455 39.0 35.0 41.0 20.0 41.0 47 34.940971545819465 39.0 35.0 41.0 20.0 41.0 48 34.90761313917395 39.0 35.0 41.0 20.0 41.0 49 34.896650082258475 39.0 35.0 41.0 20.0 41.0 50 34.795639234377646 39.0 35.0 41.0 20.0 41.0 51 33.85230728979298 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 12.0 9 14.0 10 13.0 11 15.0 12 9.0 13 14.0 14 21.0 15 23.0 16 46.0 17 107.0 18 226.0 19 479.0 20 981.0 21 1664.0 22 2683.0 23 4029.0 24 6285.0 25 10399.0 26 14401.0 27 15339.0 28 14013.0 29 12199.0 30 11801.0 31 13537.0 32 16279.0 33 21930.0 34 33523.0 35 42707.0 36 49352.0 37 74717.0 38 128787.0 39 227491.0 40 172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.51979962205181 17.866796725586582 21.083906488394945 20.529497163966663 2 39.600808223288034 24.387327218099426 21.30387859018785 14.707985968424689 3 27.609982496079038 24.713801649719667 33.469032563549476 14.207183290651827 4 24.05345876625085 22.05465602875705 37.13319616477859 16.75868904021352 5 21.71154505162306 33.60283589114296 28.585140010038806 16.10047904719518 6 21.971331108491608 31.416196601310165 32.681000638445205 13.931471651753021 7 71.01999087122888 4.04779949692224 20.613817433109 4.318392198739889 8 71.70351116425958 5.46972646390936 18.23905720554381 4.587705166287249 9 65.51315211348114 6.077742434993054 19.851948964197298 8.557156487328497 10 30.75286767121067 29.85420982807481 26.147246225139387 13.245676275575132 11 22.65826402624308 21.667038737556364 37.31548720194633 18.359210034254218 12 20.14785196602732 20.30156227115863 39.43501153893734 20.115574223876713 13 21.070682567601963 20.776770263525723 41.548279397273596 16.604267771598717 14 17.806933600276423 25.63563690241742 38.1252746096455 18.43215488766066 15 16.848697017223802 25.02904285830071 40.69128401427046 17.430976110205027 16 19.884511091741306 25.476238889418163 36.15519479688484 18.48405522195569 17 19.863893150719996 25.583452182728987 35.82303265739665 18.729622009154365 18 19.874841988365795 24.386331869222534 36.52845062571896 19.210375516692714 19 18.665919681033344 26.46277181911383 34.50476416630289 20.36654433354994 20 19.729947630429805 26.76720638274577 35.59595092076881 17.90689506605562 21 19.7418918169525 26.895748580561406 36.71557621457447 16.64678338791163 22 19.25004727907165 22.218319822657268 37.65362143469587 20.87801146357521 23 17.96078609810443 25.230814294916183 37.45839086212854 19.350008744850847 24 19.048986805939673 24.67398769464403 36.48181142120178 19.795214078214514 25 19.118376841928644 27.997599787279725 33.82750035192693 19.056523018864706 26 18.496852564658575 25.599519957455946 35.12131169918851 20.782315778696976 27 20.455130383593236 24.33684881077138 34.99931036542101 20.208710440214368 28 18.464574822507966 25.070278740343337 35.654960889898774 20.810185547249922 29 19.48452303592783 25.47751862368845 35.00130106317479 20.036657277208928 30 20.031822725521174 25.14222824487289 36.30549247729538 18.52045655231056 31 22.31728593955957 24.040377038154567 33.660708318699335 19.981628703586527 32 23.470753095179525 25.417655498378295 33.08980464145401 18.021786764988175 33 21.707137078025397 25.94902960594138 32.137824537056126 20.206008778977093 34 20.71207258652781 25.961684755947566 32.47780727486275 20.848435382661876 35 20.61609251625618 25.638196370957996 33.286314948291626 20.459396164494198 36 22.48578428514755 27.164919355412064 31.4781926170708 18.871103742369584 37 21.87890585563744 25.197825589282086 32.80229100872921 20.120977546351266 38 21.28411380534673 26.47215653709594 31.477197268193912 20.76653238936342 39 22.772160376298753 25.03586810774225 30.63811816497481 21.553853350984188 40 21.193537057549648 25.472684072000696 33.47884385962168 19.854935010827973 41 20.211269908754947 26.244221644287908 31.690344120545284 21.85416432641187 42 21.077081238953404 25.514915302920212 33.59515748552123 19.812845972605157 43 22.771733798208658 25.126018277449237 31.3792265001685 20.723021424173613 44 21.816483261786708 24.995769767273213 31.346522179927796 21.841224791012284 45 20.86564069896242 23.952359758898066 31.015781967406593 24.166217574732926 46 22.713150407168786 25.278733233703647 30.5070164986186 21.501099860508965 47 20.001820066517745 24.901638202058667 33.9295947081566 21.166947023266992 48 19.95461209121377 24.941452157134307 32.22541523822253 22.87852051342939 49 20.782884549483768 23.39752385637969 34.185683754910976 21.63390783922556 50 19.625435998356252 23.822111248722045 34.34650369487722 22.20594905804448 51 19.112689134060695 23.106597598934123 32.819211939636354 24.961501327368822 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 162.0 1 390.5 2 619.0 3 11640.5 4 22662.0 5 15126.0 6 7590.0 7 7339.0 8 7088.0 9 6997.0 10 6906.0 11 6790.5 12 6675.0 13 6474.5 14 6274.0 15 5942.0 16 5610.0 17 5297.5 18 4985.0 19 4827.0 20 4669.0 21 4630.0 22 4591.0 23 4647.5 24 4704.0 25 5133.5 26 6250.0 27 6937.0 28 7988.5 29 9040.0 30 10535.0 31 12030.0 32 13899.0 33 15768.0 34 17504.5 35 19241.0 36 21303.0 37 23365.0 38 25104.0 39 26843.0 40 28906.5 41 30970.0 42 33706.5 43 36443.0 44 41431.5 45 46420.0 46 64638.5 47 82857.0 48 75852.5 49 68848.0 50 66300.5 51 63753.0 52 54944.5 53 46136.0 54 40833.0 55 35530.0 56 31504.5 57 27479.0 58 24179.0 59 20879.0 60 18205.5 61 15532.0 62 13093.0 63 10654.0 64 8874.0 65 7094.0 66 5488.0 67 3882.0 68 3089.0 69 2296.0 70 1762.0 71 1228.0 72 1076.5 73 925.0 74 706.0 75 390.5 76 294.0 77 192.0 78 90.0 79 89.0 80 88.0 81 63.0 82 38.0 83 28.5 84 19.0 85 11.5 86 4.0 87 2.0 88 0.0 89 1.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 703271.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.86933972231415 #Duplication Level Percentage of deduplicated Percentage of total 1 73.76523957422941 32.36032354579763 2 9.825489748633705 8.620754954418544 3 4.402452182677386 5.79398011239353 4 2.6570791186576215 4.66257226101833 5 1.938482386671842 4.251997118331468 6 1.4031112887674049 3.6932139477090793 7 1.0753463691214076 3.3022314630300844 8 0.881028000584212 3.092009332999999 9 0.6912631616145052 2.7292732626948917 >10 3.302948377137242 21.653463853752527 >50 0.03270443194164559 0.993688269933714 >100 0.017660387342642723 1.3964142952936776 >500 0.002943397890439723 1.0549506126880634 >1k 0.0035974863105374395 3.3269753512339864 >5k 3.270442100488581E-4 1.2991401873915973 >10k+ 3.270442100488581E-4 1.7690114313129095 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12330 1.753235950295121 No Hit GAATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC 9055 1.2875548686068388 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCG 3206 0.4558697856160712 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGC 3107 0.44179270864289866 No Hit GAACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCT 3065 0.4358206153815528 No Hit GCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC 2316 0.3293182855542173 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT 2263 0.3217820726291856 No Hit GAATGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT 1846 0.26248771810582266 No Hit CGTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC 1753 0.2492637973128424 No Hit CGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTG 1622 0.23063655404531114 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCT 1477 0.21001861302399785 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1388 0.19736346301781246 No Hit CGTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCT 1146 0.16295283041672415 No Hit CCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC 979 0.1392066500680392 TruSeq Adapter, Index 13 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTC 976 0.13878007197794306 No Hit GAATGACTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCT 973 0.13835349388784693 No Hit CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT 931 0.13238140062650103 TruSeq Adapter, Index 19 (95% over 23bp) GAATATGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC 917 0.13039070287271906 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCC 760 0.10806644949102125 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTC 730 0.10380066859005989 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.8438539339742435E-4 0.0 0.0 0.13764253040435337 0.0 2 2.8438539339742435E-4 0.0 0.0 0.6857953761778888 0.0 3 2.8438539339742435E-4 0.0 0.0 1.1046950606522947 0.0 4 2.8438539339742435E-4 0.0 0.0 1.960268516688446 0.0 5 2.8438539339742435E-4 0.0 0.0 4.237768939711718 0.0 6 2.8438539339742435E-4 0.0 0.0 6.0454646928424465 0.0 7 2.8438539339742435E-4 0.0 0.0 7.276995638949992 0.0 8 2.8438539339742435E-4 0.0 0.0 8.794902676208745 0.0 9 2.8438539339742435E-4 0.0 0.0 9.603836927727718 0.0 10 2.8438539339742435E-4 0.0 0.0 11.083920707664612 0.0 11 2.8438539339742435E-4 0.0 0.0 12.067609783426304 0.0 12 2.8438539339742435E-4 0.0 0.0 13.407775949811667 0.0 13 2.8438539339742435E-4 0.0 0.0 13.940145406251643 0.0 14 2.8438539339742435E-4 0.0 0.0 14.261074322700637 0.0 15 2.8438539339742435E-4 0.0 0.0 14.600914867810559 0.0 16 2.8438539339742435E-4 0.0 0.0 15.043845118027049 0.0 17 2.8438539339742435E-4 0.0 0.0 15.552184008724943 0.0 18 2.8438539339742435E-4 0.0 0.0 16.102043166858863 0.0 19 2.8438539339742435E-4 0.0 0.0 16.55634883281125 0.0 20 2.8438539339742435E-4 0.0 0.0 16.953919612780847 0.0 21 2.8438539339742435E-4 0.0 0.0 17.367273782084006 0.0 22 2.8438539339742435E-4 0.0 0.0 17.84390370141809 0.0 23 2.8438539339742435E-4 0.0 0.0 18.293517008379414 0.0 24 4.265780900961365E-4 0.0 0.0 18.678006060252734 0.0 25 4.265780900961365E-4 0.0 0.0 19.023534313230606 0.0 26 4.265780900961365E-4 0.0 0.0 19.374750274076423 0.0 27 4.265780900961365E-4 0.0 0.0 19.77018816359554 0.0 28 4.265780900961365E-4 0.0 0.0 20.133917081750848 0.0 29 4.265780900961365E-4 0.0 0.0 20.529212778573267 0.0 30 4.265780900961365E-4 0.0 0.0 20.99361412599126 0.0 31 4.265780900961365E-4 0.0 0.0 21.3980101554024 0.0 32 4.265780900961365E-4 0.0 0.0 21.809942397738567 0.0 33 4.265780900961365E-4 0.0 0.0 22.207655370404865 0.0 34 4.265780900961365E-4 0.0 0.0 22.615037446446674 0.0 35 4.265780900961365E-4 0.0 0.0 23.029386964626724 0.0 36 4.265780900961365E-4 0.0 0.0 23.432076681677476 0.0 37 4.265780900961365E-4 0.0 0.0 23.841876033563164 0.0 38 4.265780900961365E-4 0.0 0.0 24.266747811298917 0.0 39 4.265780900961365E-4 0.0 0.0 24.77309600424303 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCACGG 35 1.2110286E-7 45.000004 2 TAGCACG 20 7.031416E-4 45.0 1 CGTAGTA 20 7.031416E-4 45.0 10 GCGTAAG 40 6.8084773E-9 45.0 1 CGCCCGT 20 7.031416E-4 45.0 38 CGTTTTT 7255 0.0 44.007584 1 CGTTATT 815 0.0 43.343555 1 TGCGAAG 70 0.0 41.785717 1 ACGGGTC 50 1.0804797E-9 40.5 5 CCCGTCG 50 1.0804797E-9 40.5 40 CGTTTCT 235 0.0 39.255318 1 TGGGCGA 315 0.0 38.57143 6 CCGATGA 455 0.0 38.076923 18 CCGTCGA 65 9.094947E-12 38.07692 41 CGCGACC 60 1.546141E-10 37.500004 10 CGTTACT 30 1.1394713E-4 37.500004 1 TTAACGG 60 1.546141E-10 37.500004 2 CGATGAT 30 1.1394713E-4 37.500004 10 GCCCGTC 30 1.1394713E-4 37.500004 39 GTTTTTT 8605 0.0 37.391052 2 >>END_MODULE