SRR2935836.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935836.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	547482
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6735	1.2301774304908655	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC	3475	0.6347240639874918	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT	1399	0.25553351525712265	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC	1169	0.21352300166946128	TruSeq Adapter, Index 21 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGC	1165	0.21279238404184977	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCG	1147	0.20950460471759802	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTG	1102	0.20128515640696865	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC	1005	0.18356767893738973	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT	997	0.18210644368216672	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT	961	0.1755308850336632	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC	823	0.1503245768810664	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT	800	0.1461235255223003	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	767	0.14009593009450538	No Hit
CTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGCT	760	0.13881734924618527	TruSeq Adapter, Index 14 (95% over 22bp)
CGTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT	623	0.11379369550049134	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAG	35	1.2103737E-7	45.000004	1
CGCACGG	35	1.2103737E-7	45.000004	2
TAGCACG	25	3.8881197E-5	45.0	1
ACTAGCG	20	7.0300454E-4	45.0	1
TCTACGG	20	7.0300454E-4	45.0	2
TATAGCG	20	7.0300454E-4	45.0	1
CGCCGGT	110	0.0	45.0	28
AATCGCG	20	7.0300454E-4	45.0	1
CGTTTTT	3685	0.0	44.32836	1
CGTTATT	535	0.0	44.15888	1
CGCCCAA	50	1.0786607E-9	40.5	37
TATTGCG	40	3.453806E-7	39.375	1
AAGGGCG	230	0.0	39.130432	5
ATAGCGG	75	0.0	39.000004	2
CGAACGG	35	6.242295E-6	38.57143	2
GGCCGGT	140	0.0	38.57143	9
CTTGCGG	70	0.0	38.57143	2
ACGCCGG	130	0.0	38.076927	27
CACGCCG	130	0.0	38.076927	26
ATGGGCG	160	0.0	37.96875	5