SRR2935833.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935833.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	451582
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	1352	0.2993919155325057	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	1280	0.2834479673680528	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	1209	0.26772546292810606	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	1206	0.26706113175458723	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	829	0.18357684761571544	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	624	0.13818088409192572	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	529	0.11714373026382806	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	482	0.10673587521203237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGT	35	1.2097371E-7	45.0	4
CGAAAGG	40	6.7993824E-9	45.0	2
CGGCCTA	20	7.028732E-4	45.0	44
TATGACG	20	7.028732E-4	45.0	1
CGTCCTA	20	7.028732E-4	45.0	25
CGTAAGG	105	0.0	42.857143	2
AACGGGC	95	0.0	42.63158	4
TAAGGGC	185	0.0	42.567566	4
GCGAGAC	70	0.0	41.785713	21
GTAACGG	60	3.6379788E-12	41.249996	2
TACGGGA	175	0.0	41.142857	4
TAACGGG	140	0.0	40.17857	3
CGGACGG	45	1.9237632E-8	40.0	2
CGGGTAT	70	0.0	38.571426	6
ATTAGCG	35	6.2398667E-6	38.571426	1
AACGGGA	205	0.0	38.414635	4
TAATACG	30	1.1388245E-4	37.499996	4
CTCGTAC	30	1.1388245E-4	37.499996	29
GGCCGAT	60	1.546141E-10	37.499996	8
GAATCGG	30	1.1388245E-4	37.499996	2