SRR2935832.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935832.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	507024
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	4552	0.8977878759190887	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4073	0.8033150304522073	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGC	3777	0.7449351509987693	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCG	3526	0.6954305910568336	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	2010	0.3964309381804412	No Hit
CGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	1310	0.25837041244595915	No Hit
CCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	1292	0.2548202846413582	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	1032	0.20354066079712202	No Hit
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	1017	0.20058222095995457	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTT	955	0.188354002966329	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	900	0.17750639023004827	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCT	821	0.1619252737542996	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTT	763	0.1504859730505854	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCT	647	0.12760737164315694	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGCTGGAT	641	0.12642399570828994	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTC	621	0.12247940925873332	No Hit
CGTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	595	0.11735144687430969	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	524	0.10334816497838367	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGCTGGATCGTA	511	0.10078418378617186	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	70	0.0	45.0	31
AGTCCGC	20	7.0295535E-4	45.0	40
TTGGACG	20	7.0295535E-4	45.0	1
GTCGAAG	20	7.0295535E-4	45.0	1
CCGATCG	55	1.8189894E-12	45.0	40
GCGCGAG	25	3.8877104E-5	45.0	1
TCGATTG	20	7.0295535E-4	45.0	1
TAACGCG	20	7.0295535E-4	45.0	1
CCCCGAT	50	2.1827873E-11	45.0	38
AGGTTCG	20	7.0295535E-4	45.0	1
CTACGAA	20	7.0295535E-4	45.0	11
TACGACG	20	7.0295535E-4	45.0	1
TTGCGCG	20	7.0295535E-4	45.0	1
AACGAGC	25	3.8877104E-5	45.0	15
TATAGCG	20	7.0295535E-4	45.0	1
CGCACGG	20	7.0295535E-4	45.0	2
GCTACGA	20	7.0295535E-4	45.0	10
TAATGCG	20	7.0295535E-4	45.0	1
TCGAAAG	25	3.8877104E-5	45.0	1
CGCCCGG	25	3.8877104E-5	45.0	2

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content