SRR2935831.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935831.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	669686
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15886	2.372156503197021	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTT	2989	0.4463285778708231	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTC	2289	0.3418019788378434	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTC	2070	0.3091000857118112	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG	2028	0.3028284897698324	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1847	0.27580089773416194	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCT	1712	0.25564219649208736	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT	1102	0.1645547316204908	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	852	0.12722380339442665	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	826	0.12334138685891596	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	791	0.11811505690726698	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT	712	0.1063184835878307	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTC	706	0.10542254131040518	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCC	699	0.10437727532007539	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	30	2.164139E-6	45.000004	1
ACCGCGT	20	7.0311746E-4	45.0	23
CGCATCG	20	7.0311746E-4	45.0	21
TTAACGG	25	3.8890557E-5	45.0	2
ACGTCCC	20	7.0311746E-4	45.0	43
TACGTAG	20	7.0311746E-4	45.0	1
TCACGAC	65	0.0	44.999996	25
CGTTATT	795	0.0	44.71698	1
CGTTTTT	7195	0.0	43.092422	1
TACGGGA	180	0.0	42.5	4
TTACGGG	155	0.0	42.096775	3
CTCACGA	70	0.0	41.785713	24
CTTACGG	55	6.002665E-11	40.90909	2
CACAACG	150	0.0	40.500004	12
CGTTTCT	345	0.0	40.434784	1
GTTATTT	910	0.0	40.054943	2
CGTTAGG	90	0.0	40.0	2
CGGTCTA	75	0.0	39.000004	31
TAACGGG	145	0.0	38.793102	3
CATAGCG	35	6.244385E-6	38.571426	1