##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935829.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 624922 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00281955188007 33.0 31.0 34.0 30.0 34.0 2 32.117534668326606 33.0 31.0 34.0 30.0 34.0 3 32.05104637058705 33.0 31.0 34.0 30.0 34.0 4 35.72009146741513 37.0 35.0 37.0 33.0 37.0 5 32.03463632261306 37.0 35.0 37.0 0.0 37.0 6 33.818775783217745 37.0 35.0 37.0 17.0 37.0 7 35.476885115262384 37.0 35.0 37.0 32.0 37.0 8 35.71487321617738 37.0 35.0 37.0 35.0 37.0 9 37.64641827300047 39.0 37.0 39.0 35.0 39.0 10 37.33379205724874 39.0 37.0 39.0 34.0 39.0 11 37.275864827930526 39.0 37.0 39.0 34.0 39.0 12 37.13142120136593 39.0 37.0 39.0 34.0 39.0 13 37.03934891074406 39.0 37.0 39.0 33.0 39.0 14 38.035170789314506 40.0 37.0 41.0 33.0 41.0 15 38.20473595104669 40.0 37.0 41.0 33.0 41.0 16 38.22002265882782 40.0 37.0 41.0 33.0 41.0 17 38.211656814770485 40.0 37.0 41.0 33.0 41.0 18 38.10746941218264 40.0 37.0 41.0 33.0 41.0 19 37.97902778266727 40.0 37.0 41.0 34.0 41.0 20 37.99415607067762 40.0 36.0 41.0 33.0 41.0 21 37.945607611829956 40.0 36.0 41.0 33.0 41.0 22 38.04162439472446 40.0 36.0 41.0 34.0 41.0 23 38.05991947795085 40.0 36.0 41.0 34.0 41.0 24 38.02258361843558 40.0 36.0 41.0 34.0 41.0 25 37.780070152755066 40.0 35.0 41.0 33.0 41.0 26 37.81705396833525 40.0 35.0 41.0 34.0 41.0 27 37.79880209050089 40.0 35.0 41.0 34.0 41.0 28 37.73349474014357 40.0 35.0 41.0 33.0 41.0 29 37.7022380393073 40.0 35.0 41.0 33.0 41.0 30 37.52201714774004 40.0 35.0 41.0 33.0 41.0 31 37.47782283228947 40.0 35.0 41.0 33.0 41.0 32 37.36873401800545 40.0 35.0 41.0 33.0 41.0 33 37.26896316660319 40.0 35.0 41.0 33.0 41.0 34 37.09969244161671 40.0 35.0 41.0 32.0 41.0 35 37.030890255103834 40.0 35.0 41.0 32.0 41.0 36 36.93660008769094 40.0 35.0 41.0 31.0 41.0 37 36.905916258349045 40.0 35.0 41.0 31.0 41.0 38 36.79640179094351 39.0 35.0 41.0 31.0 41.0 39 36.68983809179385 39.0 35.0 41.0 31.0 41.0 40 36.59398292906955 39.0 35.0 41.0 31.0 41.0 41 36.46087671741434 39.0 35.0 41.0 30.0 41.0 42 36.483652359814506 39.0 35.0 41.0 31.0 41.0 43 36.417527307407966 39.0 35.0 41.0 31.0 41.0 44 36.36983015480332 39.0 35.0 41.0 31.0 41.0 45 36.35107421406192 39.0 35.0 41.0 31.0 41.0 46 36.25055126879835 39.0 35.0 41.0 30.0 41.0 47 36.161076102297564 39.0 35.0 41.0 30.0 41.0 48 36.12672621543169 38.0 35.0 41.0 30.0 41.0 49 36.11908366164097 38.0 35.0 41.0 30.0 41.0 50 36.00101292641322 38.0 35.0 40.0 30.0 41.0 51 34.97615542419694 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 4.0 9 22.0 10 28.0 11 17.0 12 16.0 13 11.0 14 17.0 15 26.0 16 46.0 17 81.0 18 168.0 19 315.0 20 583.0 21 925.0 22 1502.0 23 2203.0 24 3238.0 25 4646.0 26 5833.0 27 6845.0 28 7223.0 29 7980.0 30 9531.0 31 12095.0 32 16151.0 33 24978.0 34 42960.0 35 46835.0 36 47609.0 37 72375.0 38 118774.0 39 191765.0 40 117.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.53131750842505 19.457148252101863 22.83004919013893 13.181485049334157 2 34.76625882910187 24.61427186112827 23.41060164308506 17.208867666684803 3 31.639628625652485 24.78485314967308 27.341492218228836 16.234026006445603 4 27.75690406162689 24.55714473166251 28.922489526692928 18.763461680017667 5 23.62534844348575 35.454824762130315 23.552219316970756 17.36760747741318 6 25.02024252626728 33.98824173256823 26.065172933582108 14.926342807582385 7 77.51879434553433 5.329785157187617 12.576449540902704 4.574970956375355 8 77.79082829537126 6.185251919439546 11.013694509074732 5.0102252761144594 9 71.54572890696758 6.7296398590544095 13.146120635855354 8.578510598122646 10 40.24406245899488 25.733451534751538 19.426424417767336 14.596061588486242 11 31.464406757963392 22.335107421406192 26.61772189169208 19.58276392893833 12 27.384057530379792 20.15995596250412 31.1934929479199 21.262493559196187 13 26.596439235616604 21.170322056192614 33.53346497642906 18.699773731761724 14 21.078150553189037 24.81637708386007 33.13181485049334 20.973657512457557 15 19.51779582091845 23.61446708549227 36.28308812939855 20.58464896419073 16 25.286355737196004 23.779447675069846 30.159123858657562 20.775072729076587 17 24.57698720800356 24.018677530955863 29.548487651258874 21.8558476097817 18 25.18042251673009 22.67482981876138 31.60906481128845 20.535682853220084 19 23.752724339997634 25.02024252626728 28.72502488310541 22.50200825062968 20 23.55285939685273 27.66025199944953 29.057066321876967 19.729822281820773 21 23.74040280226972 26.938881972470163 30.428917528907608 18.891797696352505 22 22.175247470884365 22.514969868239557 31.983831582181455 23.325951078694622 23 20.780833448014313 25.725130496285935 31.649549863823008 21.844486191876747 24 22.445041141134414 25.041045122431278 29.910932884423975 22.602980852010333 25 23.284985966248588 26.533391367242633 27.71673904903332 22.46488361747546 26 21.00006080758879 24.315674596189606 29.348942748054956 25.335321848166654 27 23.236979975100894 23.005911137709987 30.560133904711307 23.196974982477812 28 20.16475656161889 24.50865868060334 30.242974323195536 25.083610434582237 29 22.057792812543006 24.863742995125794 30.273378117589072 22.80508607474213 30 25.110493789624943 22.9057386361818 29.732830657266028 22.250936916927234 31 24.173096802480952 22.490166772813247 28.961854439434042 24.374881985271763 32 24.58274792694128 23.149769091182577 29.753473233459538 22.5140097484166 33 24.255187047343508 21.65422244696138 28.47683390887183 25.613756596823283 34 21.033665001392173 22.165486252684335 31.62730708792457 25.173541657998914 35 20.966136573844416 23.796249771971542 31.604424232144172 23.633189422039873 36 22.371111914766963 24.55618461183956 29.55888894934088 23.513814524052602 37 21.35866556146207 24.667078451390733 29.80035908481378 24.17389690233341 38 21.253212400907636 24.25390688757957 29.206524974316793 25.286355737196004 39 21.400430773760565 21.968661688978784 30.01414576539152 26.61676177186913 40 23.284985966248588 20.98565901024448 30.961784030647028 24.76757099285991 41 20.05930340106445 22.900137937214566 29.96261933489299 27.077939326827988 42 20.922451121900014 22.73051676849271 32.31299266148415 24.034039448123128 43 21.816802736981575 22.36455109597678 31.129804999663957 24.68884116737769 44 22.01890795971337 21.905773840575304 29.96117915515856 26.114139044552758 45 21.175602715218858 21.22808926554034 29.253410825671043 28.342897193569755 46 23.05439718876916 22.32966674240945 29.220446711749627 25.39548935707176 47 20.0292196466119 23.591424209741376 32.37556046994665 24.00379567370008 48 20.50031843974128 23.85833752052256 30.643664329308294 24.99767971042786 49 22.383753492435858 21.114475086490796 32.15345275090331 24.348318670170038 50 20.73986833556828 22.091557026316885 31.3704750352844 25.798099602830433 51 20.113230131120364 21.283136135389697 29.723549498977476 28.880084234512466 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 202.0 1 426.0 2 650.0 3 4178.0 4 7706.0 5 4957.5 6 2209.0 7 2130.5 8 2052.0 9 2016.5 10 1981.0 11 1972.0 12 1963.0 13 1944.5 14 1926.0 15 1886.5 16 1847.0 17 1830.5 18 1814.0 19 1702.0 20 1590.0 21 1708.0 22 1826.0 23 2041.5 24 2257.0 25 2661.5 26 3600.5 27 4135.0 28 4658.5 29 5182.0 30 6308.5 31 7435.0 32 8858.5 33 10282.0 34 11640.5 35 12999.0 36 14538.5 37 16078.0 38 17177.0 39 18276.0 40 19957.5 41 21639.0 42 24647.0 43 27655.0 44 32248.0 45 36841.0 46 48514.5 47 60188.0 48 61323.0 49 62458.0 50 63304.5 51 64151.0 52 58148.0 53 52145.0 54 47321.5 55 42498.0 56 39745.0 57 36992.0 58 33954.5 59 30917.0 60 27498.0 61 24079.0 62 21566.0 63 19053.0 64 16532.0 65 14011.0 66 11858.0 67 9705.0 68 8126.5 69 6548.0 70 5331.5 71 4115.0 72 3442.0 73 2769.0 74 2310.0 75 1417.5 76 984.0 77 728.5 78 473.0 79 345.0 80 217.0 81 144.5 82 72.0 83 66.5 84 61.0 85 37.0 86 13.0 87 9.5 88 6.0 89 4.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 624922.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.27580488359931 #Duplication Level Percentage of deduplicated Percentage of total 1 71.68774068822071 26.722182344401784 2 10.298981100667893 7.678056200167465 3 4.1444082958834505 4.634584649859654 4 2.2793854600396504 3.3986371065180503 5 1.5706190247731493 2.927304415695647 6 1.253583175138273 2.80369931050903 7 1.0456341102302706 2.7283797150805675 8 0.8967445424290584 2.6741499675214495 9 0.7448054169107565 2.498689925731188 >10 5.989021961451852 36.49811222353286 >50 0.05021453819249719 1.3279924180306735 >100 0.031438667376379306 2.1579266420510796 >500 0.0048031297380579496 1.3791003498339718 >1k 0.002619888948031609 2.571184731066594 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4538 0.7261706260941365 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC 3503 0.560549956634588 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG 2461 0.3938091473815932 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC 2453 0.39252898761765465 No Hit GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 1747 0.2795548884500786 TruSeq Adapter, Index 19 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 1095 0.1752218676890876 TruSeq Adapter, Index 19 (95% over 21bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 994 0.15905985066936354 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTT 981 0.1569795910529634 No Hit CGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTG 977 0.15633951117099415 TruSeq Adapter, Index 16 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC 880 0.14081757403323936 No Hit CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT 867 0.13873731441683923 TruSeq Adapter, Index 16 (95% over 23bp) GAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT 817 0.13073631589222334 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 700 0.11201397934462222 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6001997049231744E-4 0.0 0.0 0.14337789356111644 0.0 2 1.6001997049231744E-4 0.0 0.0 0.7119288487203203 0.0 3 3.200399409846349E-4 0.0 0.0 1.0676532431247419 0.0 4 3.200399409846349E-4 0.0 0.0 1.5981194453067742 0.0 5 3.200399409846349E-4 0.0 0.0 3.239284262675982 0.0 6 3.200399409846349E-4 0.0 0.0 4.447595059863471 0.0 7 3.200399409846349E-4 0.0 0.0 5.507567344404582 0.0 8 3.200399409846349E-4 0.0 0.0 6.964709195707624 0.0 9 3.200399409846349E-4 0.0 0.0 7.76400894831675 0.0 10 3.200399409846349E-4 0.0 0.0 9.382770969817033 0.0 11 3.200399409846349E-4 0.0 0.0 10.777665052598564 0.0 12 3.200399409846349E-4 0.0 0.0 12.319297448321551 0.0 13 3.200399409846349E-4 0.0 0.0 12.846883291034722 0.0 14 3.200399409846349E-4 0.0 0.0 13.170923731281665 0.0 15 3.200399409846349E-4 0.0 0.0 13.579614735919042 0.0 16 3.200399409846349E-4 0.0 0.0 14.1491258109012 0.0 17 3.200399409846349E-4 0.0 0.0 14.82024956714598 0.0 18 3.200399409846349E-4 0.0 0.0 15.520816997961346 0.0 19 3.200399409846349E-4 0.0 0.0 16.084087294094303 0.0 20 4.800599114769523E-4 0.0 0.0 16.60383215825335 0.0 21 4.800599114769523E-4 0.0 0.0 17.15638111636332 0.0 22 4.800599114769523E-4 0.0 0.0 17.788620019778467 0.0 23 4.800599114769523E-4 0.0 0.0 18.376853431308227 1.6001997049231744E-4 24 4.800599114769523E-4 0.0 0.0 18.85003248405401 1.6001997049231744E-4 25 6.400798819692697E-4 0.0 0.0 19.283846624058683 1.6001997049231744E-4 26 6.400798819692697E-4 0.0 0.0 19.710299845420707 1.6001997049231744E-4 27 8.000998524615872E-4 0.0 0.0 20.219643411497756 1.6001997049231744E-4 28 8.000998524615872E-4 0.0 0.0 20.66529902931886 1.6001997049231744E-4 29 8.000998524615872E-4 0.0 0.0 21.14023830174006 1.6001997049231744E-4 30 8.000998524615872E-4 0.0 0.0 21.81504251730616 1.6001997049231744E-4 31 8.000998524615872E-4 0.0 0.0 22.31910542435696 1.6001997049231744E-4 32 8.000998524615872E-4 0.0 0.0 22.863493363971823 1.6001997049231744E-4 33 8.000998524615872E-4 0.0 0.0 23.36659615119967 1.6001997049231744E-4 34 8.000998524615872E-4 0.0 0.0 23.889701434739056 1.6001997049231744E-4 35 8.000998524615872E-4 0.0 0.0 24.424328156153887 1.6001997049231744E-4 36 8.000998524615872E-4 0.0 0.0 24.908228546922658 1.6001997049231744E-4 37 8.000998524615872E-4 0.0 0.0 25.407170814917702 1.6001997049231744E-4 38 8.000998524615872E-4 0.0 0.0 26.000524865503216 1.6001997049231744E-4 39 8.000998524615872E-4 0.0 0.0 26.97296622618503 1.6001997049231744E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGG 40 6.8066583E-9 45.0 2 TAGACGG 35 1.2107375E-7 45.0 2 TTACGGG 105 0.0 45.0 3 GCTAACG 20 7.0308126E-4 45.0 1 TAGTACG 20 7.0308126E-4 45.0 1 TAGCCGT 30 2.1639062E-6 44.999996 44 AGTACGG 90 0.0 42.5 2 CGTTAGG 75 0.0 42.0 2 CGGGTAT 65 0.0 41.53846 6 CGTTTTT 2140 0.0 41.214954 1 CGTTATT 295 0.0 41.18644 1 CACGTGA 155 0.0 40.64516 43 TGTACGG 75 0.0 39.0 2 CACGACC 180 0.0 38.75 27 TAATACG 105 0.0 38.57143 4 AATACGG 105 0.0 38.57143 5 CGGTCTA 35 6.243714E-6 38.571426 31 CCGAAAC 35 6.243714E-6 38.571426 31 TACGGGA 200 0.0 38.25 4 TACGCGG 65 9.094947E-12 38.07692 2 >>END_MODULE