SRR2935828.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935828.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	127971
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGC	1521	1.1885505309796751	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	1519	1.1869876768955467	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCG	1440	1.1252549405724734	No Hit
GCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	1332	1.040860820029538	No Hit
CCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	823	0.6431144556188512	No Hit
CTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGCT	595	0.46494909002820956	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCT	329	0.25708949683912763	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	308	0.24067952895577902	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGGATCGTT	300	0.23442811261926527	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTC	264	0.20629673910495344	No Hit
TCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	254	0.19848246868431127	No Hit
GAACTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCT	254	0.19848246868431127	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGGATCGTTCGTA	243	0.1898867712216049	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCC	182	0.1422197216556876	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTG	182	0.1422197216556876	No Hit
ACTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	169	0.1320611701088528	No Hit
GAATATGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	136	0.10627407772073359	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	129	0.10080408842628409	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGTTAG	30	2.1503547E-6	45.000004	1
CGGAAGG	20	7.009779E-4	45.000004	2
ATTAGCG	20	7.009779E-4	45.000004	1
ATAGGGC	20	7.009779E-4	45.000004	4
CGCGGGC	30	2.1503547E-6	45.000004	4
GGATGCG	20	7.009779E-4	45.000004	1
GACACCT	20	7.009779E-4	45.000004	13
ATACTTA	20	7.009779E-4	45.000004	45
TGCATCA	20	7.009779E-4	45.000004	18
AACGGGA	20	7.009779E-4	45.000004	4
TGCGACG	20	7.009779E-4	45.000004	1
ATTGGGC	20	7.009779E-4	45.000004	4
AGTTAGG	30	2.1503547E-6	45.000004	2
ACCAATC	20	7.009779E-4	45.000004	40
GTCTTGA	20	7.009779E-4	45.000004	15
TGATGCG	20	7.009779E-4	45.000004	1
GGGATTA	30	2.1503547E-6	45.000004	7
TCAACCA	20	7.009779E-4	45.000004	37
ATGGGCG	25	3.8713355E-5	45.0	5
TTAGGGT	25	3.8713355E-5	45.0	4