SRR2935826.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935826.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	240725
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	1725	0.7165853151936857	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG	1585	0.6584276664243431	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	1550	0.6438882542320075	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1056	0.43867483643161287	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	718	0.29826565583134285	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	537	0.2230761242081213	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCT	344	0.14290165126181328	No Hit
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	323	0.13417800394641188	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGAATCAT	293	0.1217156506386956	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTC	284	0.11797694464638073	No Hit
GAACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCT	271	0.11257659154637034	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTA	262	0.10883788555405545	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	252	0.10468376778481671	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATG	20	7.0221646E-4	45.0	6
TAATACG	40	6.7757355E-9	45.0	4
GACCGAA	20	7.0221646E-4	45.0	31
AGTGCGG	25	3.8815895E-5	45.0	2
TGACCGA	20	7.0221646E-4	45.0	30
CCTCCGC	25	3.8815895E-5	45.0	45
TTAAGCG	25	3.8815895E-5	45.0	1
CAAGCGA	35	1.2065902E-7	45.0	15
CCGACAA	20	7.0221646E-4	45.0	12
TTCGCAG	20	7.0221646E-4	45.0	1
TAACGGG	60	0.0	44.999996	3
GACGGGA	100	0.0	42.75	4
ACGGGAC	60	3.6379788E-12	41.249996	5
TAGTAGG	55	6.002665E-11	40.909092	2
AGTAAGG	105	0.0	40.714287	2
ACGGGAT	50	1.0732037E-9	40.5	5
TATTAGG	50	1.0732037E-9	40.5	2
CGTTTTT	380	0.0	40.263157	1
CTTGAGG	45	1.9173967E-8	40.0	2
GTACAGG	40	3.443056E-7	39.375	2