SRR2935825.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935825.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	691977
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15002	2.167991132653253	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTT	4450	0.6430849580260616	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC	3470	0.5014617537866143	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG	2615	0.3779027337613822	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCT	2493	0.36027208996830823	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCT	1807	0.26113584700069514	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1784	0.2578120371052795	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC	1487	0.21489153541230416	No Hit
CCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	1235	0.1784741400364463	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTC	1046	0.1511610935045529	No Hit
GCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	908	0.1312182341320593	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCC	892	0.12890601855263975	No Hit
CTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGCT	823	0.11893458886639297	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGT	790	0.11416564423384014	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCG	694	0.10029235075732286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTACG	35	1.2109922E-7	45.000004	1
TATAGCG	25	3.8891892E-5	45.000004	1
TTACGAG	25	3.8891892E-5	45.000004	1
CGGTCTA	35	1.2109922E-7	45.000004	31
TCGCATA	20	7.031338E-4	45.0	28
GTTCGAA	20	7.031338E-4	45.0	15
CGTTATT	1030	0.0	43.907764	1
CGTTTTT	7695	0.0	43.713448	1
TTGTACG	60	3.6379788E-12	41.249996	1
CGTTTCT	525	0.0	41.142853	1
TAGACGG	95	0.0	40.263157	2
GTACGAG	45	1.9263098E-8	40.000004	1
CGACGGT	40	3.4555705E-7	39.375	28
GTTATTT	1150	0.0	39.326088	2
TAAACGG	35	6.2446834E-6	38.57143	2
CGTTCTG	350	0.0	38.57143	1
TAGTGCG	35	6.2446834E-6	38.57143	1
AGTACGG	95	0.0	37.894737	2
GTTTTTT	8935	0.0	37.697258	2
CTCGTCC	90	0.0	37.500004	37