SRR2935824.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935824.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	276885
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	1512	0.5460750853242321	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	1445	0.5218773136861874	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1350	0.48756704046806437	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	1344	0.4854000758437618	No Hit
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	918	0.3315455875182838	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	557	0.20116654928941619	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	378	0.13651877133105803	No Hit
TCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	375	0.13543528901890678	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCT	306	0.11051519583942793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	35	1.2074634E-7	45.000004	2
AGTCCGG	20	7.023999E-4	45.000004	2
CGAACTT	20	7.023999E-4	45.000004	10
GCAAGCG	20	7.023999E-4	45.000004	1
TTGTGCG	20	7.023999E-4	45.000004	1
GCGAACT	20	7.023999E-4	45.000004	9
TCGGGCC	20	7.023999E-4	45.000004	5
GCCGGAC	20	7.023999E-4	45.000004	38
TTCGTAC	20	7.023999E-4	45.000004	33
ACTTACG	20	7.023999E-4	45.000004	1
CGCTCGA	20	7.023999E-4	45.000004	41
CGCTCAA	20	7.023999E-4	45.000004	14
TTTGGCG	20	7.023999E-4	45.000004	1
GTTCCCG	20	7.023999E-4	45.000004	17
TTAACGG	20	7.023999E-4	45.000004	2
TCCCGCT	20	7.023999E-4	45.000004	18
CTCGAGG	20	7.023999E-4	45.000004	2
GGCGACT	35	1.2074634E-7	45.000004	10
TTCGCAG	20	7.023999E-4	45.000004	1
GCGTCAT	40	6.7830115E-9	45.000004	37