SRR2935823.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935823.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	337826
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGC	4856	1.4374263674199144	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTC	4778	1.414337558388046	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCG	4412	1.3059977621615861	No Hit
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	1991	0.589356651057053	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1236	0.36586882004345433	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCT	1051	0.3111069011858176	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCT	911	0.26966544907733564	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGAGCATT	847	0.25072078525631536	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTC	729	0.21579156133630922	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGAGCATTCGTA	720	0.21312746798647825	No Hit
CCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	635	0.18796658634918567	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGC	605	0.17908627518308243	No Hit
CTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT	567	0.1678378810393516	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTT	524	0.15510943503460362	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCG	520	0.15392539354578985	No Hit
GAATATGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTC	469	0.1388288645634143	No Hit
TCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	374	0.11070787920408731	No Hit
CGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTG	359	0.10626772362103568	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	20	7.0262083E-4	45.0	1
CGGCGCC	40	6.7902874E-9	45.0	31
CCCTCGA	40	6.7902874E-9	45.0	41
CACGGGT	20	7.0262083E-4	45.0	4
GCGCCCA	20	7.0262083E-4	45.0	33
CTGCGCG	20	7.0262083E-4	45.0	1
TTAAGCG	20	7.0262083E-4	45.0	1
AGTTACG	20	7.0262083E-4	45.0	1
GACGATA	20	7.0262083E-4	45.0	23
TTCGCGG	20	7.0262083E-4	45.0	2
CGATCTA	20	7.0262083E-4	45.0	10
CGCCCAC	20	7.0262083E-4	45.0	34
CTTACGG	20	7.0262083E-4	45.0	2
TCACGGG	30	2.1609358E-6	44.999996	3
CGGGTGC	25	3.8849394E-5	44.999996	6
CGGCGCT	25	3.8849394E-5	44.999996	9
ACGCCGG	30	2.1609358E-6	44.999996	27
TACGGGA	120	0.0	44.999996	4
TCGATGG	25	3.8849394E-5	44.999996	2
CGTTAGG	25	3.8849394E-5	44.999996	2