FastQCFastQC Report
Sat 14 Jan 2017
SRR2935819.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935819.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences253865
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC11750.46284442518661495No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC9900.3899710476040415No Hit
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT7250.2855848580938688Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4970.19577334410021074No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC4100.1615031611289465No Hit
TCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC3820.15047367695428673No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG3370.1327477202450121No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC3290.12959643905225218No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC3180.12526342741220728No Hit
ACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC2710.10674965040474269No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGTTG207.022891E-445.0000041
CGACGGT207.022891E-445.00000428
CGTTGGT207.022891E-445.00000422
ACCTCTT207.022891E-445.00000415
ATGTACG207.022891E-445.0000041
TACGCGG207.022891E-445.0000042
GGACGTG207.022891E-445.0000048
CGAATAT351.2069358E-745.00000414
AGTTCGG207.022891E-445.0000042
CGGTCTA207.022891E-445.00000431
ATAACCC207.022891E-445.00000420
GCGTGCC207.022891E-445.00000414
TAGTGCG207.022891E-445.0000041
TGTCGAG207.022891E-445.0000041
ACGGTCT207.022891E-445.00000430
CGAAAGG253.8821934E-545.02
TAAACGG253.8821934E-545.02
TACTCTC253.8821934E-545.020
TTTGCGA253.8821934E-545.015
CACGGGC603.6379788E-1241.2499964