SRR2935819.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935819.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	253865
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	1175	0.46284442518661495	No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	990	0.3899710476040415	No Hit
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT	725	0.2855848580938688	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	497	0.19577334410021074	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC	410	0.1615031611289465	No Hit
TCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	382	0.15047367695428673	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG	337	0.1327477202450121	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC	329	0.12959643905225218	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC	318	0.12526342741220728	No Hit
ACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	271	0.10674965040474269	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.022891E-4	45.000004	1
CGACGGT	20	7.022891E-4	45.000004	28
CGTTGGT	20	7.022891E-4	45.000004	22
ACCTCTT	20	7.022891E-4	45.000004	15
ATGTACG	20	7.022891E-4	45.000004	1
TACGCGG	20	7.022891E-4	45.000004	2
GGACGTG	20	7.022891E-4	45.000004	8
CGAATAT	35	1.2069358E-7	45.000004	14
AGTTCGG	20	7.022891E-4	45.000004	2
CGGTCTA	20	7.022891E-4	45.000004	31
ATAACCC	20	7.022891E-4	45.000004	20
GCGTGCC	20	7.022891E-4	45.000004	14
TAGTGCG	20	7.022891E-4	45.000004	1
TGTCGAG	20	7.022891E-4	45.000004	1
ACGGTCT	20	7.022891E-4	45.000004	30
CGAAAGG	25	3.8821934E-5	45.0	2
TAAACGG	25	3.8821934E-5	45.0	2
TACTCTC	25	3.8821934E-5	45.0	20
TTTGCGA	25	3.8821934E-5	45.0	15
CACGGGC	60	3.6379788E-12	41.249996	4