Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935819.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 253865 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC | 1175 | 0.46284442518661495 | No Hit |
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC | 990 | 0.3899710476040415 | No Hit |
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT | 725 | 0.2855848580938688 | Illumina Single End Adapter 2 (95% over 21bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 497 | 0.19577334410021074 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC | 410 | 0.1615031611289465 | No Hit |
TCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC | 382 | 0.15047367695428673 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG | 337 | 0.1327477202450121 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC | 329 | 0.12959643905225218 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC | 318 | 0.12526342741220728 | No Hit |
ACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC | 271 | 0.10674965040474269 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AACGTTG | 20 | 7.022891E-4 | 45.000004 | 1 |
CGACGGT | 20 | 7.022891E-4 | 45.000004 | 28 |
CGTTGGT | 20 | 7.022891E-4 | 45.000004 | 22 |
ACCTCTT | 20 | 7.022891E-4 | 45.000004 | 15 |
ATGTACG | 20 | 7.022891E-4 | 45.000004 | 1 |
TACGCGG | 20 | 7.022891E-4 | 45.000004 | 2 |
GGACGTG | 20 | 7.022891E-4 | 45.000004 | 8 |
CGAATAT | 35 | 1.2069358E-7 | 45.000004 | 14 |
AGTTCGG | 20 | 7.022891E-4 | 45.000004 | 2 |
CGGTCTA | 20 | 7.022891E-4 | 45.000004 | 31 |
ATAACCC | 20 | 7.022891E-4 | 45.000004 | 20 |
GCGTGCC | 20 | 7.022891E-4 | 45.000004 | 14 |
TAGTGCG | 20 | 7.022891E-4 | 45.000004 | 1 |
TGTCGAG | 20 | 7.022891E-4 | 45.000004 | 1 |
ACGGTCT | 20 | 7.022891E-4 | 45.000004 | 30 |
CGAAAGG | 25 | 3.8821934E-5 | 45.0 | 2 |
TAAACGG | 25 | 3.8821934E-5 | 45.0 | 2 |
TACTCTC | 25 | 3.8821934E-5 | 45.0 | 20 |
TTTGCGA | 25 | 3.8821934E-5 | 45.0 | 15 |
CACGGGC | 60 | 3.6379788E-12 | 41.249996 | 4 |