SRR2935817.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935817.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443278
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1620	0.3654591475326996	TruSeq Adapter, Index 22 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	1536	0.34650941395692997	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGC	1510	0.3406440202310965	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCG	1362	0.3072563944071215	No Hit
CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	912	0.20573996453692717	TruSeq Adapter, Index 22 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	722	0.16287747192506735	No Hit
CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT	664	0.14979313207513117	TruSeq Adapter, Index 20 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.028591E-4	45.000004	1
AGGTACG	20	7.028591E-4	45.000004	1
GTATTCG	20	7.028591E-4	45.000004	22
GATCGGA	20	7.028591E-4	45.000004	15
GATCGCA	20	7.028591E-4	45.000004	10
ATCCGAT	20	7.028591E-4	45.000004	29
CTAACGG	20	7.028591E-4	45.000004	2
TGCGACG	20	7.028591E-4	45.000004	1
TGCGAAT	20	7.028591E-4	45.000004	27
TATTCGG	20	7.028591E-4	45.000004	23
TTGCGTG	20	7.028591E-4	45.000004	1
CTACCTT	45	3.8380676E-10	45.000004	17
CGAGACA	20	7.028591E-4	45.000004	22
ATCGGAA	20	7.028591E-4	45.000004	16
TTACCGG	35	1.2096643E-7	45.000004	2
TGTCGTA	20	7.028591E-4	45.000004	37
TCAACGG	40	6.7993824E-9	45.000004	2
ATCGAAC	20	7.028591E-4	45.000004	39
TGCAACG	20	7.028591E-4	45.000004	1
CCCGATG	20	7.028591E-4	45.000004	31