SRR2935811.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935811.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	386477
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2139	0.5534611374027433	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC	878	0.22718040142104184	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGC	639	0.1653397226743118	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCG	607	0.15705979916010526	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	593	0.1534373326226399	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	40	6.7957444E-9	45.000004	2
TTAAGCG	20	7.027468E-4	45.000004	1
TCGTAAG	20	7.027468E-4	45.000004	1
TTACGCG	20	7.027468E-4	45.000004	1
TAGTGCG	20	7.027468E-4	45.000004	1
GGTCATA	25	3.8859842E-5	45.0	8
ACCGGTA	30	2.1617489E-6	44.999996	41
CGAAAGG	110	0.0	42.954544	2
CGGGCAA	60	3.6379788E-12	41.249996	6
TAGGGTC	60	3.6379788E-12	41.249996	5
GACGGGA	160	0.0	40.781254	4
CGTTATT	95	0.0	40.263157	1
CGATAGG	45	1.9226718E-8	40.0	2
TATGCGG	40	3.4502773E-7	39.375004	2
ATGGGCG	110	0.0	38.863636	5
CGTTTTT	935	0.0	38.743317	1
TACGCGG	35	6.237533E-6	38.571426	2
GTACGAG	35	6.237533E-6	38.571426	1
GACGGGT	30	1.1385203E-4	37.499996	4
GCGATAT	30	1.1385203E-4	37.499996	9