SRR2935810.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935810.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	545573
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1759	0.32241331590822864	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	1595	0.29235317730166266	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	1416	0.2595436357737645	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	1299	0.2380982929873729	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1270	0.23278278067279723	No Hit
CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1053	0.193008085077524	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	888	0.16276465294286924	No Hit
CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT	837	0.1534166830103396	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	30	2.1633969E-6	45.000004	4
GAATCGC	30	2.1633969E-6	45.000004	17
CTATGCG	20	7.0300244E-4	45.0	1
TAGCCCG	20	7.0300244E-4	45.0	1
TCTCGTT	20	7.0300244E-4	45.0	20
TATTCGG	50	2.1827873E-11	45.0	1
TGTTACG	25	3.8881015E-5	45.0	1
TTAACGG	20	7.0300244E-4	45.0	2
CGAAAGG	90	0.0	42.5	2
GGCGATT	170	0.0	41.02941	8
AACACGT	205	0.0	40.60976	41
CACGACC	220	0.0	39.886364	27
AAACACG	210	0.0	39.642857	40
CGTTTTT	655	0.0	39.503815	1
TACGAAT	40	3.4537698E-7	39.375	12
GCGATTA	40	3.4537698E-7	39.375	9
TAACGGG	155	0.0	39.193546	3
AACGGGC	115	0.0	39.130432	4
ACGACCA	220	0.0	38.863636	28
TCCGACG	35	6.242255E-6	38.571426	26