SRR2935808.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935808.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	982575
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18918	1.9253492099839706	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	3877	0.3945754776989034	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	3096	0.31509045111060224	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	2810	0.2859832582754497	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	2656	0.2703101544411368	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	2232	0.22715823219601558	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2161	0.2199323206879882	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	1600	0.16283744243441978	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	1286	0.13088059435666488	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG	1130	0.11500394371930896	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTC	1094	0.1113401012645345	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	1082	0.11011882044627637	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	1071	0.10899931302953973	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC	1037	0.10553901737780831	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	990	0.10075566750629722	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	983	0.10004325369564664	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	9505	0.0	43.982113	1
CGTTATT	1230	0.0	43.353657	1
CGGTCTA	65	0.0	41.53846	31
CCGACGG	40	3.457535E-7	39.375	2
TAGACGG	70	0.0	38.571426	2
TACGGTT	35	6.2473664E-6	38.571426	33
GTTATTT	1420	0.0	38.34507	2
CACGACC	470	0.0	38.29787	27
GTTTTTT	11140	0.0	37.930878	2
GACACGA	475	0.0	37.894737	25
AGACACG	475	0.0	37.894737	24
TCAAGCG	475	0.0	37.894737	17
GCGAGAC	480	0.0	37.500004	21
AAATGCG	30	1.13980124E-4	37.500004	1
GCGTAAG	90	0.0	37.5	1
AACACGT	430	0.0	37.151165	41
CGTTTTC	310	0.0	37.01613	1
CAACACG	55	2.748493E-9	36.81818	22
ACACGAC	490	0.0	36.734695	26
GTCAAGC	485	0.0	36.649487	16