SRR2935806.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935806.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	564445
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6007	1.0642312359928778	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	1698	0.30082647556449255	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	1324	0.23456669826112378	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	1300	0.230314733942191	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	1207	0.21383837220632657	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	1195	0.21171239004686018	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	1041	0.18442895233370835	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	1004	0.17787384067535367	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	888	0.157322679800512	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT	775	0.13730301446553694	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	683	0.12100381790962804	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	678	0.12011799200985038	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	662	0.11728334913056189	Illumina Single End Adapter 1 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	661	0.11710618395060636	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	30	2.1635296E-6	45.000004	1
CACGAGG	45	3.8380676E-10	45.000004	2
CCGATTC	20	7.0302334E-4	45.0	11
ACTACGG	40	6.8048394E-9	45.0	2
ATTATCG	20	7.0302334E-4	45.0	30
TATCGCG	20	7.0302334E-4	45.0	32
ATCGCCT	20	7.0302334E-4	45.0	41
TACGTCG	20	7.0302334E-4	45.0	1
CGTTTTT	2910	0.0	42.835052	1
TACGAAT	90	0.0	42.500004	12
CGAATAT	90	0.0	42.500004	14
GCTACGA	90	0.0	42.500004	10
CGTTATT	375	0.0	41.4	1
TCACGAC	50	1.0786607E-9	40.5	25
CTACGAA	95	0.0	40.263157	11
TAATACG	80	0.0	39.375	4
CGTTCTG	195	0.0	38.076923	1
AGTACGG	95	0.0	37.894737	2
TTACGGG	155	0.0	37.74194	3
GTATACG	30	1.1391856E-4	37.500004	1