##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935802.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 719928 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00096398528742 33.0 31.0 34.0 30.0 34.0 2 32.13388977786668 33.0 31.0 34.0 30.0 34.0 3 32.01208176373193 33.0 31.0 34.0 30.0 34.0 4 35.69902962518474 37.0 35.0 37.0 33.0 37.0 5 32.04421414363659 37.0 35.0 37.0 0.0 37.0 6 33.828981509262036 37.0 35.0 37.0 17.0 37.0 7 35.489268371281575 37.0 35.0 37.0 32.0 37.0 8 35.747740051782955 37.0 35.0 37.0 35.0 37.0 9 37.6922178328944 39.0 37.0 39.0 35.0 39.0 10 37.29903129201809 39.0 37.0 39.0 34.0 39.0 11 37.3095823471236 39.0 37.0 39.0 34.0 39.0 12 37.27720827638319 39.0 37.0 39.0 34.0 39.0 13 37.25121401028992 39.0 37.0 39.0 34.0 39.0 14 38.40876309853208 40.0 38.0 41.0 34.0 41.0 15 38.556279239035014 40.0 38.0 41.0 34.0 41.0 16 38.49944577791113 40.0 38.0 41.0 34.0 41.0 17 38.51159004789368 40.0 38.0 41.0 34.0 41.0 18 38.35327838339389 40.0 38.0 41.0 34.0 41.0 19 38.139659799313264 40.0 37.0 41.0 34.0 41.0 20 38.10544804480448 40.0 36.0 41.0 34.0 41.0 21 38.013720816526096 40.0 36.0 41.0 34.0 41.0 22 38.09782783833939 40.0 36.0 41.0 34.0 41.0 23 38.1095456767899 40.0 36.0 41.0 34.0 41.0 24 38.05992404796035 40.0 36.0 41.0 34.0 41.0 25 37.79760198242047 40.0 35.0 41.0 33.0 41.0 26 37.83492515918258 40.0 35.0 41.0 34.0 41.0 27 37.827314675912035 40.0 35.0 41.0 34.0 41.0 28 37.739075296418534 40.0 35.0 41.0 33.0 41.0 29 37.6807152937516 40.0 35.0 41.0 33.0 41.0 30 37.46339633963397 40.0 35.0 41.0 33.0 41.0 31 37.368453512017865 40.0 35.0 41.0 33.0 41.0 32 37.20674845262304 40.0 35.0 41.0 33.0 41.0 33 36.98946561322799 40.0 35.0 41.0 32.0 41.0 34 36.74905823915725 40.0 35.0 41.0 31.0 41.0 35 36.63298690980209 40.0 35.0 41.0 31.0 41.0 36 36.46869270260359 40.0 35.0 41.0 30.0 41.0 37 36.4040751297352 40.0 35.0 41.0 30.0 41.0 38 36.26005795023947 39.0 35.0 41.0 30.0 41.0 39 36.16403306997366 39.0 35.0 41.0 29.0 41.0 40 36.09385521885522 39.0 35.0 41.0 29.0 41.0 41 35.922093598248715 39.0 35.0 41.0 28.0 41.0 42 35.896261848407065 39.0 35.0 41.0 28.0 41.0 43 35.82769388049916 39.0 35.0 41.0 28.0 41.0 44 35.77166049938327 39.0 35.0 41.0 27.0 41.0 45 35.74612044537787 39.0 35.0 41.0 27.0 41.0 46 35.643305997266395 39.0 35.0 41.0 27.0 41.0 47 35.55728350612839 39.0 35.0 41.0 27.0 41.0 48 35.49978192263671 38.0 35.0 41.0 26.0 41.0 49 35.47014701470147 38.0 35.0 40.0 27.0 41.0 50 35.37703770377038 38.0 35.0 40.0 26.0 41.0 51 34.40037198164261 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 13.0 9 32.0 10 32.0 11 29.0 12 24.0 13 23.0 14 20.0 15 29.0 16 55.0 17 106.0 18 217.0 19 391.0 20 739.0 21 1200.0 22 1919.0 23 3017.0 24 4672.0 25 7153.0 26 9941.0 27 11390.0 28 11399.0 29 10911.0 30 11523.0 31 13846.0 32 17580.0 33 25061.0 34 40482.0 35 51049.0 36 56188.0 37 83512.0 38 135911.0 39 221311.0 40 153.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.75324199086575 18.50962874065184 22.880482492693712 17.85664677578869 2 38.31772066095498 22.636847018035137 23.06230623062306 15.983126090386818 3 30.203714815926038 23.29413496905246 30.736129168472402 15.7660210465491 4 26.191785845251193 24.19297485304086 31.779705748352615 17.835533553355333 5 21.996644108855328 34.580124679134585 26.634330099676635 16.788901112333456 6 23.31066439977331 32.64368103477015 29.445166738896113 14.600487826560435 7 74.81109222033314 5.110511051105111 15.175406429531844 4.902990299029903 8 76.4968163483015 4.554761031658722 14.138080474714137 4.810342145325644 9 70.73193430454157 5.795718460734962 16.08160816081608 7.39073907390739 10 35.7969130246358 22.95507328510629 24.056711226678225 17.191302463579692 11 27.693185985265195 24.154776588769987 29.321682168216824 18.830355257747996 12 24.457862452911957 20.908340834083408 33.58974786367526 21.04404884932938 13 23.355252191885857 20.995988487737662 35.80927537198164 19.83948394839484 14 20.166738896111834 24.488004355991155 34.90154571012657 20.44371103777044 15 19.47291951417364 23.762376237623762 36.479897989798985 20.284806258403616 16 22.40154571012657 23.313025747019147 33.90186240846307 20.383566134391216 17 22.310842195330643 23.69625851474036 32.05070507050705 21.942194219421943 18 22.88978897889789 23.32386016379416 32.81314242535365 20.97320843195431 19 22.182218221822183 25.75007500750075 30.7683546132391 21.299352157437966 20 22.455856696780792 26.084969608071916 30.819331933193318 20.639841761953974 21 22.118045137847115 25.993154871042663 32.86495316198286 19.023846829127358 22 21.19434165638786 22.807141825293638 33.23207320732073 22.766443310997765 23 20.172295007278507 25.072785056283408 32.63020746519096 22.124712471247125 24 20.74040737407074 24.84387327621651 32.811475592003646 21.604243757709103 25 22.41182451578491 25.592975964263093 30.17523974619684 21.819959773755155 26 20.88958895889589 24.911518929670745 31.165199853318665 23.033692258114698 27 21.871353802046873 23.516935026836016 31.449672745052283 23.16203842606483 28 20.345367870120345 24.277844451111775 32.179745752353014 23.19704192641486 29 22.191246902468027 23.27191052438577 31.53593137091487 23.000911202231332 30 22.924514673689593 22.852701936860353 31.854296540765187 22.368486848684867 31 22.591842517585093 22.79102910291029 31.663721927748327 22.953406451756287 32 23.244407774110744 23.119673078418952 31.67775110844418 21.958168039026123 33 22.333761153893168 22.116517207276285 31.066856685668565 24.482864953161982 34 21.2669878098921 22.655737796001823 33.1049771643831 22.972297229722972 35 22.01525708126368 22.873120645397872 32.02973075085286 23.08189152248558 36 22.95618450733962 23.815437099265484 31.13339111688947 22.094987276505428 37 21.49562178440066 23.778766765565447 32.68826882688269 22.037342623151204 38 21.307547421408806 24.24478558967008 31.813598026469315 22.6340689624518 39 21.669250258359167 22.774360769410272 31.47370292584814 24.082686046382413 40 23.067028925114734 22.511278905668345 32.69313042415353 21.728561745063395 41 21.877187718771875 23.41414697025258 31.759287039815092 22.94937827116045 42 22.15582669378049 24.24339656187841 31.715810469935885 21.88496627440522 43 21.845656787901014 22.88714982609372 32.21586047493638 23.051332911068883 44 22.424464668689094 23.175928703981512 30.986015268193484 23.413591359135914 45 21.609383160538275 22.860758298052026 30.859474836372524 24.67038370503717 46 23.103421453256438 22.888677756664556 30.20663177428854 23.801269015790467 47 21.171144892267005 23.961979531286463 32.24127968352391 22.625595892922625 48 20.914174750808414 23.911418919669742 31.473286217510637 23.7011201120112 49 21.351162894067187 22.671989421164337 32.38712760164905 23.589720083119424 50 20.701931304241537 22.341539709526508 33.1338689424498 23.822660043782157 51 20.752630818637417 21.977892233667813 32.00208909779867 25.2673878498961 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 217.0 1 479.0 2 741.0 3 8764.5 4 16788.0 5 10824.5 6 4861.0 7 4748.0 8 4635.0 9 4563.5 10 4492.0 11 4466.5 12 4441.0 13 4245.0 14 4049.0 15 3845.0 16 3641.0 17 3482.5 18 3324.0 19 3127.0 20 2930.0 21 3001.5 22 3073.0 23 3077.0 24 3081.0 25 3535.5 26 4480.5 27 4971.0 28 5915.0 29 6859.0 30 8170.0 31 9481.0 32 10820.5 33 12160.0 34 14200.0 35 16240.0 36 17994.5 37 19749.0 38 21547.0 39 23345.0 40 25625.0 41 27905.0 42 30216.0 43 32527.0 44 37835.5 45 43144.0 46 54970.0 47 66796.0 48 68436.5 49 70077.0 50 69253.5 51 68430.0 52 61703.0 53 54976.0 54 48895.5 55 42815.0 56 39725.5 57 36636.0 58 33923.0 59 31210.0 60 28428.5 61 25647.0 62 22484.0 63 19321.0 64 17343.0 65 15365.0 66 12954.5 67 10544.0 68 8908.5 69 7273.0 70 6379.5 71 5486.0 72 4561.0 73 3636.0 74 2958.5 75 1826.5 76 1372.0 77 1031.5 78 691.0 79 529.5 80 368.0 81 307.0 82 246.0 83 159.5 84 73.0 85 50.5 86 28.0 87 19.0 88 10.0 89 6.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 719928.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.911072314619865 #Duplication Level Percentage of deduplicated Percentage of total 1 71.87086736169096 27.965725172252093 2 9.640818672827274 7.5026918510103915 3 4.249071177621984 4.960077475872479 4 2.592394924419906 4.034914654886259 5 1.8319336820651166 3.5641251989211793 6 1.4697467731805005 3.43136537852434 7 1.2003347202534074 3.269441777107054 8 1.0281020251687085 3.2003641798517397 9 0.8613504748534968 3.0164463553730916 >10 5.183082049261591 31.867549189342103 >50 0.04012546923315154 1.04777566495434 >100 0.02602732807327983 2.010311220959182 >500 0.001807453338422142 0.4924502927916287 >1k 0.003976397344528712 2.2407121291547116 >5k 3.614906676844284E-4 1.3960494589994046 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9925 1.3786100832305452 No Hit GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC 2586 0.35920258692535917 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTT 1965 0.27294396106277297 No Hit CGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG 1566 0.2175217521752175 No Hit CGTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC 1442 0.20029780755853366 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC 1377 0.19126912691269127 No Hit GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 1346 0.1869631407585203 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG 1260 0.17501750175017503 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT 1177 0.16348857107933015 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1143 0.15876587658765876 No Hit CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 1050 0.14584791812514583 No Hit CGTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT 1018 0.14140302919180808 No Hit CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT 924 0.12834616795012835 Illumina Single End Adapter 1 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT 790 0.10973319554177641 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.1670833750041673E-4 0.0 0.0 0.13320776522096653 0.0 2 4.1670833750041673E-4 0.0 0.0 0.5524163527463858 0.0 3 4.1670833750041673E-4 0.0 0.0 0.957317954017624 0.0 4 5.556111166672222E-4 0.0 0.0 1.447366958918114 0.0 5 5.556111166672222E-4 0.0 0.0 2.796946361302797 0.0 6 5.556111166672222E-4 0.0 0.0 4.30654176528764 0.0 7 5.556111166672222E-4 0.0 0.0 5.405262748497072 0.0 8 5.556111166672222E-4 0.0 0.0 6.867353402006867 0.0 9 5.556111166672222E-4 0.0 0.0 7.708270827082708 0.0 10 6.945138958340278E-4 0.0 0.0 9.043126534875709 0.0 11 6.945138958340278E-4 0.0 0.0 10.262137324843595 0.0 12 6.945138958340278E-4 0.0 0.0 11.347106932915514 0.0 13 6.945138958340278E-4 0.0 0.0 11.85951928526186 0.0 14 6.945138958340278E-4 0.0 0.0 12.167327843895501 0.0 15 6.945138958340278E-4 0.0 0.0 12.48916558322499 0.0 16 6.945138958340278E-4 0.0 0.0 12.954212087875455 0.0 17 6.945138958340278E-4 0.0 0.0 13.4657910235468 0.0 18 6.945138958340278E-4 0.0 0.0 14.050849529397384 0.0 19 8.334166750008335E-4 0.0 0.0 14.432137658210266 0.0 20 8.334166750008335E-4 0.0 0.0 14.818981898189818 0.0 21 8.334166750008335E-4 0.0 0.0 15.242357569090242 0.0 22 8.334166750008335E-4 0.0 0.0 15.699208809769866 0.0 23 9.72319454167639E-4 0.0 0.0 16.14994832816615 0.0 24 9.72319454167639E-4 0.0 0.0 16.54832149881655 0.0 25 9.72319454167639E-4 0.0 0.0 16.89571734951273 0.0 26 9.72319454167639E-4 0.0 0.0 17.23741818626307 0.0 27 9.72319454167639E-4 0.0 0.0 17.633013301330134 0.0 28 9.72319454167639E-4 0.0 0.0 17.993882721605495 0.0 29 9.72319454167639E-4 0.0 0.0 18.38711648942672 0.0 30 9.72319454167639E-4 0.0 0.0 18.871053772043872 0.0 31 0.0011112222333344445 0.0 0.0 19.247758109144247 0.0 32 0.0011112222333344445 0.0 0.0 19.63932504361547 0.0 33 0.0011112222333344445 0.0 0.0 20.014918158482516 0.0 34 0.0011112222333344445 0.0 0.0 20.41426364858708 0.0 35 0.0011112222333344445 0.0 0.0 20.85208520852085 0.0 36 0.0011112222333344445 0.0 0.0 21.236290295696236 0.0 37 0.0011112222333344445 0.0 0.0 21.6343856607883 0.0 38 0.0011112222333344445 0.0 0.0 22.103043637697102 0.0 39 0.0011112222333344445 0.0 0.0 22.70754853263104 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATCG 25 3.889347E-5 45.000004 21 TCGACGG 35 1.2110831E-7 45.000004 2 GTACGAG 25 3.889347E-5 45.000004 1 CGTTATT 610 0.0 43.52459 1 ACACGAC 130 0.0 43.26923 26 CGTTTTT 4740 0.0 43.14873 1 CGAATAT 70 0.0 41.785717 14 CATACGG 65 0.0 41.53846 3 TCACGAC 120 0.0 41.250004 25 CGACGGT 120 0.0 41.250004 28 CACGACC 140 0.0 40.178574 27 TATGCGG 90 0.0 40.0 2 CGTTTCT 210 0.0 39.642857 1 GACGGTC 125 0.0 39.6 29 CGGTCTA 125 0.0 39.6 31 TAACGTT 40 3.4558252E-7 39.375 21 TAACGGG 195 0.0 39.23077 3 TAAGGGC 350 0.0 39.214287 4 GCGAGAC 145 0.0 38.793102 21 ACGGTCT 135 0.0 38.333332 30 >>END_MODULE