SRR2935800.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935800.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	445082
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC	4195	0.9425229508270386	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG	3651	0.820298282114307	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	3623	0.8140073065187988	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	3457	0.7767108083454285	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	2368	0.5320367932201258	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	1469	0.3300515410643432	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1015	0.2280478653371738	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTT	895	0.2010865413564242	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	759	0.1705303741782413	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	735	0.1651381093820914	No Hit
ACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	725	0.16289133238369558	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTAACAT	663	0.14896131499364162	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	618	0.1388508185008605	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC	596	0.13390790910438974	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTA	532	0.11952853631465664	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCC	529	0.11885450321513788	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTAAG	45	3.8380676E-10	45.000004	1
CTTACGG	35	1.2096825E-7	45.000004	2
GCGACGT	20	7.0286234E-4	45.0	17
TACTTCG	20	7.0286234E-4	45.0	14
TAGCCGT	20	7.0286234E-4	45.0	44
ATCAAGT	25	3.8869406E-5	45.0	11
CGCCTCT	20	7.0286234E-4	45.0	39
AACGGCC	25	3.8869406E-5	45.0	17
CCGTATA	20	7.0286234E-4	45.0	17
CGCTCCG	25	3.8869406E-5	45.0	10
TTAAGCG	20	7.0286234E-4	45.0	1
GCTTACG	25	3.8869406E-5	45.0	1
CCTCACG	25	3.8869406E-5	45.0	24
ACGTGAC	20	7.0286234E-4	45.0	20
CGAATAT	20	7.0286234E-4	45.0	14
ACGTCGC	20	7.0286234E-4	45.0	20
TCGAGAG	25	3.8869406E-5	45.0	1
GCTACGA	20	7.0286234E-4	45.0	10
ATAGTCC	20	7.0286234E-4	45.0	37
TTCGAAC	20	7.0286234E-4	45.0	17