##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935798.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1287134 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06772566026537 33.0 31.0 34.0 30.0 34.0 2 32.10501004557412 33.0 31.0 34.0 30.0 34.0 3 32.12788800544465 33.0 31.0 34.0 30.0 34.0 4 35.77547015306875 37.0 35.0 37.0 35.0 37.0 5 34.84541702728698 37.0 35.0 37.0 33.0 37.0 6 35.33326833103624 37.0 35.0 37.0 33.0 37.0 7 35.92189857466278 37.0 35.0 37.0 35.0 37.0 8 35.934194885691774 37.0 35.0 37.0 35.0 37.0 9 37.797979075993645 39.0 38.0 39.0 35.0 39.0 10 37.34556308822547 39.0 37.0 39.0 34.0 39.0 11 37.27670467876693 39.0 37.0 39.0 34.0 39.0 12 37.186684525465104 39.0 37.0 39.0 34.0 39.0 13 37.14039408484276 39.0 37.0 39.0 34.0 39.0 14 38.11405727764164 40.0 37.0 41.0 33.0 41.0 15 38.2791302226497 40.0 38.0 41.0 33.0 41.0 16 38.31255720072657 40.0 37.0 41.0 34.0 41.0 17 38.32178234744789 40.0 37.0 41.0 34.0 41.0 18 38.3206457136553 40.0 37.0 41.0 34.0 41.0 19 38.240055037004694 40.0 37.0 41.0 34.0 41.0 20 38.24885287778895 40.0 37.0 41.0 34.0 41.0 21 38.15665812572739 40.0 37.0 41.0 34.0 41.0 22 38.22732986619886 40.0 37.0 41.0 34.0 41.0 23 38.23742205551248 40.0 37.0 41.0 34.0 41.0 24 38.195097013986114 40.0 37.0 41.0 34.0 41.0 25 38.031033287909416 40.0 36.0 41.0 34.0 41.0 26 38.07174622067322 40.0 37.0 41.0 34.0 41.0 27 38.08556529467794 40.0 37.0 41.0 34.0 41.0 28 37.98343529111965 40.0 36.0 41.0 34.0 41.0 29 37.93548457270183 40.0 36.0 41.0 34.0 41.0 30 37.79185073193622 40.0 36.0 41.0 33.0 41.0 31 37.71315962440585 40.0 36.0 41.0 33.0 41.0 32 37.65350460791184 40.0 36.0 41.0 33.0 41.0 33 37.54740454373826 40.0 36.0 41.0 33.0 41.0 34 37.412957003699695 40.0 35.0 41.0 33.0 41.0 35 37.36695324651512 40.0 35.0 41.0 33.0 41.0 36 37.325936538076064 40.0 35.0 41.0 33.0 41.0 37 37.24310289371581 40.0 35.0 41.0 32.0 41.0 38 37.152771195539856 39.0 35.0 41.0 32.0 41.0 39 37.07022501153726 39.0 35.0 41.0 32.0 41.0 40 36.954353625962796 39.0 35.0 41.0 31.0 41.0 41 36.86176031399994 39.0 35.0 41.0 31.0 41.0 42 36.92286739376009 39.0 35.0 41.0 32.0 41.0 43 36.841832318934934 39.0 35.0 41.0 31.0 41.0 44 36.711764276291355 39.0 35.0 41.0 31.0 41.0 45 36.6477763775955 39.0 35.0 41.0 31.0 41.0 46 36.52439062288775 39.0 35.0 41.0 31.0 41.0 47 36.40760247184831 39.0 35.0 41.0 31.0 41.0 48 36.35228422215558 39.0 35.0 41.0 31.0 41.0 49 36.32290810436209 39.0 35.0 40.0 31.0 41.0 50 36.19455705466564 38.0 35.0 40.0 30.0 41.0 51 34.98576760461615 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 14.0 9 31.0 10 29.0 11 33.0 12 27.0 13 42.0 14 36.0 15 52.0 16 98.0 17 172.0 18 258.0 19 491.0 20 821.0 21 1299.0 22 2078.0 23 3163.0 24 4476.0 25 6458.0 26 8726.0 27 10448.0 28 11974.0 29 14658.0 30 18178.0 31 23251.0 32 31053.0 33 45905.0 34 81415.0 35 95830.0 36 95819.0 37 147397.0 38 260470.0 39 422134.0 40 295.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.382145137957664 21.058957342436763 25.123025263880837 11.435872255724734 2 32.950026959120024 23.764891611906762 25.213458738561794 18.07162269041141 3 32.359101694151505 23.87296116799028 26.76691004976949 17.00102708808873 4 28.865292968719654 25.183314247001476 26.63265829354209 19.318734490736784 5 24.7157638598623 30.578945160332953 25.752252679208226 18.95303830059652 6 26.148792588805826 33.53077457358752 25.532617427556104 14.787815410050548 7 80.46131948965687 5.982438502906457 8.790226969375373 4.7660150380613056 8 81.74176115307343 4.949601207022734 8.239390770502528 5.069246869401321 9 76.3167626680672 6.7938536314012365 10.478473880730368 6.410909819801201 10 41.43344826568174 23.323756500877142 19.609535603907595 15.633259629533521 11 30.26576875445758 25.9847848009609 23.60088382406183 20.148562620519698 12 26.52552104132126 22.652653103717252 29.71749639120713 21.104329463754357 13 25.402094886779462 23.469895131353844 31.343589711716106 19.784420270150584 14 21.34610693214537 26.087182841879713 31.51761976608496 21.049090459889957 15 20.482249711374262 25.729022774629524 33.369486005342104 20.41924150865411 16 24.74303374784599 25.169329689061122 28.983773251269874 21.103863311823012 17 24.59720588532352 25.234280191495213 26.993304504426114 23.17520941875516 18 25.403571034562056 24.399557466433176 29.26315364212273 20.933717856882033 19 24.54818224054372 26.997499871808216 27.114892466518636 21.339425421129423 20 24.421699683172072 27.783820487998916 27.390543641920733 20.40393618690828 21 23.820985227645295 26.31349960454778 29.72153637461212 20.1439787931948 22 22.454616224884123 23.679818884436273 29.89548873699242 23.970076153687184 23 21.687019377935787 25.40574641024167 29.396084634544657 23.51114957727789 24 22.74083351073004 25.38430342139979 29.206982334395644 22.667880733474526 25 22.38508189512514 26.824402121302054 27.15249538898048 23.638020594592327 26 20.60562458920361 26.5336787001198 27.7712343858526 25.08946232482399 27 22.38104191172015 25.801820167907923 28.772140274439177 23.044997645932746 28 20.897901850157016 26.13294342314009 28.292858397027814 24.676296329675075 29 22.70820287553588 26.290269699969077 27.232051985263382 23.76947543923166 30 25.05302478219051 24.827407247419462 27.9199368519517 22.19963111843833 31 24.76657442037892 25.478932263462855 27.07495878440007 22.679534531758154 32 24.50397549905449 26.31971496363238 26.649983606990414 22.526325930322717 33 25.838646170484193 25.712085921123983 25.70625902198217 22.74300888640965 34 22.308866054350208 24.98652043998527 29.44580750722147 23.25880599844305 35 22.350353576239925 25.831110047594112 28.131492136793838 23.687044239372124 36 25.6864475649 26.30526425376068 26.15516333186754 21.853124849471772 37 23.439051411896507 26.8212167497712 28.432548592454243 21.30718324587805 38 23.57384701204381 27.599146631197684 26.543467890678045 22.283538466080454 39 23.002966280123125 25.990844776068382 27.017544404856057 23.988644538952432 40 24.072940346537347 23.21156926940008 30.229486595801212 22.486003788261364 41 21.40103516805554 24.67893785728603 28.814327024225918 25.105699950432513 42 22.17601275391684 25.05737553354973 29.092697419227527 23.673914293305902 43 22.956118011022937 25.174146592351686 28.496178331082856 23.373557065542517 44 23.65208284452124 24.30749245999251 27.422164281263644 24.618260414222608 45 23.305110423623336 23.463835156246358 27.419600445641244 25.81145397448906 46 23.82339367929058 23.98996530275791 28.460129248392164 23.726511769559348 47 21.49356632642755 25.181993483196003 30.297544777777606 23.026895412598844 48 21.63582035747638 25.666092263897934 29.106992745122106 23.59109463350358 49 23.771961582865497 23.995869893888283 29.39150080721976 22.84066771602646 50 21.94829753545474 23.7467116865843 29.57073622482197 24.73425455313899 51 21.558128368918855 23.71889795468071 27.546937614887028 27.176036061513408 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 548.0 1 977.5 2 1407.0 3 3180.0 4 4953.0 5 3448.5 6 1944.0 7 1962.0 8 1980.0 9 1999.5 10 2019.0 11 2085.5 12 2152.0 13 2213.5 14 2275.0 15 2112.0 16 1949.0 17 2011.5 18 2074.0 19 2196.0 20 2318.0 21 2646.0 22 2974.0 23 3454.5 24 3935.0 25 4957.0 26 7267.0 27 8555.0 28 10183.0 29 11811.0 30 14775.0 31 17739.0 32 19713.5 33 21688.0 34 26286.0 35 30884.0 36 34229.5 37 37575.0 38 41342.0 39 45109.0 40 49911.5 41 54714.0 42 61025.0 43 67336.0 44 76152.5 45 84969.0 46 99041.0 47 113113.0 48 125766.0 49 138419.0 50 137025.0 51 135631.0 52 119954.0 53 104277.0 54 94499.0 55 84721.0 56 78531.0 57 72341.0 58 65482.0 59 58623.0 60 53229.0 61 47835.0 62 42122.0 63 36409.0 64 31772.0 65 27135.0 66 22648.5 67 18162.0 68 14859.0 69 11556.0 70 10315.0 71 9074.0 72 7461.0 73 5848.0 74 4621.5 75 2510.5 76 1626.0 77 1388.5 78 1151.0 79 848.0 80 545.0 81 384.0 82 223.0 83 167.0 84 111.0 85 62.5 86 14.0 87 15.5 88 17.0 89 13.0 90 9.0 91 5.5 92 2.0 93 2.0 94 2.0 95 5.0 96 8.0 97 4.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1287134.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.254125915912027 #Duplication Level Percentage of deduplicated Percentage of total 1 71.33419670471999 20.868195725103153 2 11.834650366370065 6.924247039771686 3 4.535086740248663 3.9800999561645227 4 2.201053026912648 2.575595295876076 5 1.2995541737565524 1.90086607168116 6 0.8880084778133313 1.5586747094609141 7 0.6443383577367131 1.3194688814777242 8 0.5222654710028647 1.2222735880200724 9 0.4224364124202469 1.1122207200367242 >10 5.53646897585862 40.288088970842864 >50 0.7184060171149883 12.890976702946185 >100 0.05686140251949855 3.0079980048126096 >500 0.0034704142334503673 0.6360865002275953 >1k 0.0032034592924157232 1.7152078335787198 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 3947 0.30665027883654694 TruSeq Adapter, Index 22 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 3375 0.2622104613816433 TruSeq Adapter, Index 22 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2686 0.20868068126550926 No Hit CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT 2491 0.19353074349679208 Illumina Paired End PCR Primer 2 (95% over 21bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1466 0.11389645522533007 No Hit TCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 1405 0.1091572439233211 TruSeq Adapter, Index 22 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5538397711504785E-4 0.0 0.0 0.20401916195205783 0.0 2 1.5538397711504785E-4 0.0 0.0 1.00688817170551 0.0 3 1.5538397711504785E-4 0.0 0.0 1.4202095508315373 0.0 4 1.5538397711504785E-4 0.0 0.0 1.9361620468420537 0.0 5 1.5538397711504785E-4 0.0 0.0 3.2795342209902 0.0 6 1.5538397711504785E-4 0.0 0.0 4.114490022017909 0.0 7 1.5538397711504785E-4 0.0 0.0 4.896848346792176 0.0 8 1.5538397711504785E-4 0.0 0.0 6.071706597759052 0.0 9 1.5538397711504785E-4 0.0 0.0 6.487125660576132 0.0 10 1.5538397711504785E-4 0.0 0.0 7.594624957463636 0.0 11 2.330759656725718E-4 0.0 0.0 9.072248887839184 0.0 12 2.330759656725718E-4 0.0 0.0 10.260081700895167 0.0 13 3.107679542300957E-4 0.0 0.0 10.705334487318337 0.0 14 3.107679542300957E-4 0.0 0.0 10.891484491902164 0.0 15 3.107679542300957E-4 0.0 0.0 11.2511983989235 0.0 16 3.107679542300957E-4 0.0 0.0 11.964799313824358 0.0 17 3.107679542300957E-4 0.0 0.0 12.83417266578305 0.0 18 3.107679542300957E-4 0.0 0.0 13.849140804298543 0.0 19 3.107679542300957E-4 0.0 0.0 14.454672163115884 0.0 20 3.107679542300957E-4 0.0 0.0 15.057639686310827 0.0 21 3.107679542300957E-4 0.0 0.0 15.830131128538287 0.0 22 3.107679542300957E-4 0.0 0.0 16.648305460037573 0.0 23 3.107679542300957E-4 0.0 0.0 17.451096777802466 0.0 24 3.107679542300957E-4 0.0 0.0 18.06253272775018 0.0 25 3.107679542300957E-4 0.0 0.0 18.633102691716637 0.0 26 3.107679542300957E-4 0.0 0.0 19.154571318914737 0.0 27 3.107679542300957E-4 0.0 0.0 19.74083506456981 0.0 28 3.107679542300957E-4 0.0 0.0 20.304956593485993 0.0 29 3.107679542300957E-4 0.0 0.0 20.898756462031148 0.0 30 3.107679542300957E-4 0.0 0.0 21.607928933584226 0.0 31 3.107679542300957E-4 0.0 0.0 22.179975045333276 0.0 32 3.107679542300957E-4 0.0 0.0 22.77750412932919 0.0 33 3.107679542300957E-4 0.0 0.0 23.36594325066388 0.0 34 3.107679542300957E-4 0.0 0.0 23.94319472564628 0.0 35 3.8845994278761964E-4 0.0 0.0 24.56473063410647 0.0 36 3.8845994278761964E-4 0.0 0.0 25.116266060876335 0.0 37 3.8845994278761964E-4 0.0 0.0 25.721020499808102 0.0 38 3.8845994278761964E-4 0.0 0.0 26.331446453904565 0.0 39 3.8845994278761964E-4 0.0 0.0 27.151096933186444 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 35 1.2120836E-7 45.000004 1 CGTACAG 20 7.0336025E-4 45.0 30 TCGTTTA 55 1.8189894E-12 44.999996 38 TACGTAG 90 0.0 42.5 1 ATAACGC 70 0.0 41.785717 11 CGTTTTT 1605 0.0 41.635513 1 CGCATCG 65 0.0 41.53846 21 CGTACAT 60 3.6379788E-12 41.249996 35 CGTTAGG 130 0.0 39.80769 2 AACACGT 125 0.0 39.6 41 TATAGCG 40 3.4586446E-7 39.375 1 CGAATAT 120 0.0 39.374996 14 CTATACG 35 6.2488725E-6 38.57143 1 TCGTGAC 35 6.2488725E-6 38.57143 17 TAATGCG 70 0.0 38.57143 1 TAGCCGT 135 0.0 38.333336 44 CGGTCTA 95 0.0 37.894737 31 GGTACGA 30 1.139998E-4 37.499996 8 ATCGGAT 30 1.139998E-4 37.499996 27 AATGCGG 175 0.0 37.285713 2 >>END_MODULE