SRR2935794.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935794.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	722605
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	3801	0.5260135205264287	TruSeq Adapter, Index 19 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	3738	0.5172950643851068	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT	2160	0.2989184962738979	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	1446	0.20010932667224834	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGC	1199	0.1659274430705572	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	1180	0.16329806740888866	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCG	1139	0.1576241515073934	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1042	0.14420049681361186	No Hit
ACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	991	0.1371426989849226	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	20	7.031546E-4	45.0	2
CTTCGAA	20	7.031546E-4	45.0	34
GTACCTA	20	7.031546E-4	45.0	33
TCGTTAG	20	7.031546E-4	45.0	1
GTACCCG	25	3.8893628E-5	45.0	10
ACACGTA	20	7.031546E-4	45.0	42
TTCGTAC	25	3.8893628E-5	45.0	33
TAACGCG	20	7.031546E-4	45.0	1
AGGCGAC	25	3.8893628E-5	45.0	30
TTATCGC	20	7.031546E-4	45.0	35
ACCCTCG	25	3.8893628E-5	45.0	38
TAGTTCG	20	7.031546E-4	45.0	20
CCGTAAC	20	7.031546E-4	45.0	33
AATTCGT	25	3.8893628E-5	45.0	31
ACCGTAA	20	7.031546E-4	45.0	32
TCGACGT	25	3.8893628E-5	45.0	26
TAATGCG	25	3.8893628E-5	45.0	24
TCGGTAA	25	3.8893628E-5	45.0	34
GCGTAAG	20	7.031546E-4	45.0	1
TACGTTC	20	7.031546E-4	45.0	28