##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935793.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 419044 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.993859833334923 33.0 31.0 34.0 30.0 34.0 2 32.05229761075209 33.0 31.0 34.0 30.0 34.0 3 32.04041103082254 33.0 31.0 34.0 30.0 34.0 4 35.724360687660486 37.0 35.0 37.0 33.0 37.0 5 34.92271455980756 37.0 35.0 37.0 33.0 37.0 6 35.35044052653182 37.0 35.0 37.0 33.0 37.0 7 35.899459245329844 37.0 35.0 37.0 35.0 37.0 8 35.878912476971394 37.0 35.0 37.0 35.0 37.0 9 37.66229083342083 39.0 38.0 39.0 35.0 39.0 10 37.30878857590134 39.0 37.0 39.0 34.0 39.0 11 37.22541785588148 39.0 37.0 39.0 34.0 39.0 12 37.05415183131127 39.0 37.0 39.0 34.0 39.0 13 36.925148671738526 39.0 37.0 39.0 33.0 39.0 14 37.93592081022518 40.0 37.0 41.0 33.0 41.0 15 38.09902301428967 40.0 37.0 41.0 33.0 41.0 16 38.12187025706131 40.0 37.0 41.0 34.0 41.0 17 38.138536764635695 40.0 37.0 41.0 34.0 41.0 18 38.15624134935711 40.0 37.0 41.0 34.0 41.0 19 38.0850936894455 40.0 36.0 41.0 34.0 41.0 20 38.0481572340852 40.0 36.0 41.0 34.0 41.0 21 37.94736113630072 40.0 36.0 41.0 34.0 41.0 22 37.98783421311366 40.0 36.0 41.0 34.0 41.0 23 37.97970141560314 40.0 36.0 41.0 34.0 41.0 24 37.993299033037104 40.0 36.0 41.0 34.0 41.0 25 37.83615801681923 40.0 36.0 41.0 34.0 41.0 26 37.88875869837058 40.0 36.0 41.0 34.0 41.0 27 37.86238676606752 40.0 36.0 41.0 34.0 41.0 28 37.659033418924984 40.0 36.0 41.0 33.0 41.0 29 37.65019902444612 40.0 36.0 41.0 33.0 41.0 30 37.55022384284228 40.0 36.0 41.0 33.0 41.0 31 37.39506113916438 39.0 35.0 41.0 33.0 41.0 32 37.367980450740255 39.0 35.0 41.0 33.0 41.0 33 37.281359475377286 39.0 35.0 41.0 33.0 41.0 34 37.19189870276153 39.0 35.0 41.0 32.0 41.0 35 37.15990444917479 39.0 35.0 41.0 32.0 41.0 36 37.04228195607144 39.0 35.0 41.0 32.0 41.0 37 36.92541594677409 39.0 35.0 41.0 31.0 41.0 38 36.8235674535371 39.0 35.0 41.0 31.0 41.0 39 36.84860778343086 39.0 35.0 41.0 31.0 41.0 40 36.76192714846174 39.0 35.0 41.0 31.0 41.0 41 36.664832332642874 39.0 35.0 41.0 31.0 41.0 42 36.67152614045303 39.0 35.0 41.0 31.0 41.0 43 36.51561649850613 39.0 35.0 41.0 31.0 41.0 44 36.299133265241835 39.0 35.0 41.0 30.0 41.0 45 36.29833382651941 39.0 35.0 40.0 30.0 41.0 46 36.11073061540077 38.0 35.0 40.0 30.0 41.0 47 35.993425511402144 38.0 35.0 40.0 30.0 41.0 48 35.963528889567684 38.0 35.0 40.0 29.0 41.0 49 35.9448673647636 38.0 35.0 40.0 29.0 41.0 50 35.78949227288781 38.0 35.0 40.0 29.0 41.0 51 34.412085604375676 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 6.0 10 10.0 11 13.0 12 6.0 13 11.0 14 17.0 15 16.0 16 27.0 17 43.0 18 91.0 19 162.0 20 376.0 21 640.0 22 834.0 23 1224.0 24 1757.0 25 2312.0 26 3061.0 27 3622.0 28 4264.0 29 5272.0 30 6481.0 31 8108.0 32 10658.0 33 15548.0 34 28625.0 35 39571.0 36 31222.0 37 46681.0 38 82333.0 39 125982.0 40 65.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.51258579051365 21.10351180305648 24.672110804593313 12.71179160183656 2 32.872681627704964 23.8318649115606 25.292332070140606 18.00312139059383 3 30.566479892326342 24.96396559788471 27.469430417808155 17.000124091980794 4 31.147087179389278 25.151058122774693 25.87723484884642 17.824619848989606 5 25.13673981729842 30.602037017592426 24.829134887983123 19.43208827712603 6 25.563902597340615 34.204045398573896 24.63822414829946 15.593827855786028 7 78.60009927358463 6.095064002825479 9.98964309237216 5.315193631217724 8 78.7339754297878 5.662889815866592 9.130544763795688 6.472589990549918 9 72.67685493647446 7.2968471091341245 12.00876280295148 8.017535151439944 10 41.29542482412349 24.262845906396464 19.75448878876681 14.687240480713243 11 30.64021916552916 26.589809184715683 23.79917144738977 18.970800202365385 12 27.045131298861218 21.52637909145579 30.70966294708909 20.718826662593905 13 24.722940789034087 25.81972298851672 30.263170454653928 19.19416576779527 14 19.753295596643788 30.724458529414573 28.862362902225065 20.659882971716574 15 18.48350053932284 24.60576932255324 37.15361632668645 19.757113811437463 16 19.813671118068747 26.31155678162675 31.72864902015063 22.146123080153874 17 19.318973663863463 24.62557631179542 28.446654766563896 27.608795257777224 18 22.558967554719793 24.668769866648848 31.147325817813883 21.62493676081748 19 23.15293859356058 26.13472570899476 28.06220826452592 22.65012743291874 20 24.129447027042506 25.878905317818653 28.904363264955467 21.08728439018337 21 23.092085795286412 26.395557507087563 30.172487853304187 20.33986884432184 22 20.58137093002167 25.21692232796556 27.743625967678813 26.458080774333958 23 18.940015845591393 26.416796326877368 29.310287225207855 25.332900602323384 24 22.08884985824878 23.57485132826147 29.197649888794498 25.138648924695257 25 20.121753324233254 26.745640075982475 28.633747291453883 24.49885930833039 26 20.35036893500444 27.445327936923093 28.184868414772673 24.0194347132998 27 22.773980775288514 26.960891934975802 28.041446721585324 22.22368056815036 28 18.641717814835673 25.03484120999227 33.35974265232291 22.96369832284915 29 21.776949437290593 24.127299281221067 31.525567720812138 22.570183560676206 30 23.697750116932827 24.213925029352527 30.657639770525293 21.430685083189356 31 25.178978818453434 25.28326381000563 28.379358730825405 21.158398640715532 32 24.965874705281546 25.210479090501238 28.388904267809583 21.434741936407633 33 23.25793950038659 24.67282671986713 28.628974522961787 23.44025925678449 34 22.34657935682172 23.016437414686763 31.405293954811427 23.23168927368009 35 22.482603258846325 23.068221952825958 30.339773388951997 24.10940139937572 36 25.405685321827782 22.980164374146867 30.079180229283796 21.534970074741555 37 22.80046964041962 23.037914872901176 32.77078302039882 21.39083246628039 38 19.630635446397037 26.422285010643275 30.843300464867653 23.10377907809204 39 21.957360086291654 22.99114174167868 31.68975095694008 23.361747215089583 40 25.25224081480704 22.2153282232892 30.891744065062383 21.640686896841384 41 22.399079810234728 22.256851309170397 28.051469535418715 27.29259934517616 42 23.713977529805938 21.442139727570375 29.48330008304617 25.360582659577513 43 24.63178091083514 21.478651406534873 29.38832199005355 24.501245692576436 44 21.68292589799639 22.820515268086407 31.110575500424776 24.385983333492426 45 22.09290671146705 22.742719141665315 29.528164106871834 25.6362100399958 46 24.601951107759568 22.71002567749449 30.950926394364313 21.73709682038163 47 21.42567367627266 22.645593302851253 32.58822462557631 23.34050839529978 48 20.858668779412184 21.541174673781274 32.387768348908466 25.212388197898072 49 22.257805862868814 19.42469048596329 33.873531180496556 24.443972470671337 50 21.937075820200267 20.669428508700758 32.320710951594585 25.072784719504398 51 20.489972413398117 21.139307566747167 29.16089957140539 29.209820448449324 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 426.0 1 532.5 2 639.0 3 1087.5 4 1536.0 5 1087.0 6 638.0 7 665.0 8 692.0 9 728.0 10 764.0 11 837.0 12 910.0 13 828.5 14 747.0 15 795.0 16 843.0 17 845.0 18 847.0 19 827.5 20 808.0 21 949.0 22 1090.0 23 1146.0 24 1202.0 25 1366.0 26 1746.5 27 1963.0 28 2638.0 29 3313.0 30 4138.0 31 4963.0 32 5179.0 33 5395.0 34 6632.0 35 7869.0 36 9017.0 37 10165.0 38 12075.5 39 13986.0 40 15685.0 41 17384.0 42 21795.0 43 26206.0 44 29141.0 45 32076.0 46 39089.0 47 46102.0 48 49205.5 49 52309.0 50 51953.5 51 51598.0 52 42748.5 53 33899.0 54 29350.5 55 24802.0 56 22098.5 57 19395.0 58 17431.5 59 15468.0 60 13287.0 61 11106.0 62 10226.5 63 9347.0 64 8125.0 65 6903.0 66 5849.0 67 4795.0 68 3842.5 69 2890.0 70 2458.5 71 2027.0 72 1537.5 73 1048.0 74 837.5 75 455.5 76 284.0 77 281.5 78 279.0 79 191.5 80 104.0 81 74.5 82 45.0 83 29.5 84 14.0 85 9.0 86 4.0 87 2.5 88 1.0 89 1.0 90 1.0 91 1.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 419044.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.037527065492 #Duplication Level Percentage of deduplicated Percentage of total 1 71.91728456935365 23.04051950867358 2 11.990446503270476 7.682885087517237 3 4.69873432590484 4.516074844191979 4 2.259658331728697 2.895754598460905 5 1.2972237848735442 2.077992105894307 6 0.8151859753903503 1.5669925649986705 7 0.6168038988799373 1.3832610123126887 8 0.4622776053558261 1.184818503468649 9 0.3444369804044508 0.9931418173857539 >10 5.158849996887318 40.88567228327281 >50 0.37498524288507623 7.201711268837764 >100 0.05591231255741694 3.281169681666607 >500 0.005963980006124473 1.5550804918715446 >1k 0.002236492502296677 1.7349262314475349 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 3088 0.7369154551789311 RNA PCR Primer, Index 10 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 2501 0.5968346999360449 RNA PCR Primer, Index 35 (95% over 24bp) CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT 1675 0.399719361212665 TruSeq Adapter, Index 10 (95% over 24bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC 993 0.23696795563234407 No Hit GGAGAAGGGAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTC 963 0.22980880289420683 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG 935 0.22312692700527867 No Hit TCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 820 0.19568350817575245 RNA PCR Primer, Index 35 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 817 0.19496759290193869 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC 799 0.19067210125905631 No Hit ACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 594 0.14175122421511824 RNA PCR Primer, Index 35 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG 590 0.14079667051669992 TruSeq Adapter, Index 10 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCC 489 0.11669418963163773 No Hit GGAGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC 473 0.11287597483796452 No Hit GGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG 451 0.10762592949666383 RNA PCR Primer, Index 10 (95% over 22bp) GGAGAAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTC 446 0.10643273737364095 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4369469554509789 0.0 2 0.0 0.0 0.0 2.2670650337434735 0.0 3 0.0 0.0 0.0 3.0230715628907703 0.0 4 0.0 0.0 0.0 3.817021601550195 0.0 5 0.0 0.0 0.0 5.953312778610361 0.0 6 0.0 0.0 0.0 6.912161968671548 0.0 7 0.0 0.0 0.0 7.944511793510944 0.0 8 0.0 0.0 0.0 9.594696499651588 0.0 9 0.0 0.0 0.0 10.15597407432155 0.0 10 0.0 0.0 0.0 11.709748856921946 0.0 11 0.0 0.0 0.0 13.709538855108294 0.0 12 0.0 0.0 0.0 15.478088219852808 0.0 13 0.0 0.0 0.0 16.224310573591318 0.0 14 0.0 0.0 0.0 16.494210631819094 0.0 15 0.0 0.0 0.0 17.016828781703115 0.0 16 0.0 0.0 0.0 18.16014547398364 0.0 17 0.0 0.0 0.0 19.439724706713378 0.0 18 0.0 0.0 0.0 21.177966991533108 0.0 19 0.0 0.0 0.0 21.980269375053695 0.0 20 0.0 0.0 0.0 22.88948177279713 0.0 21 0.0 0.0 0.0 23.82828533519153 0.0 22 0.0 0.0 0.0 24.828180334284706 0.0 23 0.0 0.0 0.0 25.77605215681408 0.0 24 0.0 0.0 0.0 26.48838785425874 0.0 25 0.0 0.0 0.0 27.115290995694963 0.0 26 0.0 0.0 0.0 27.704727904468267 0.0 27 0.0 0.0 0.0 28.361222210555454 0.0 28 0.0 0.0 0.0 29.04515993547217 0.0 29 0.0 0.0 0.0 29.67564265327746 0.0 30 0.0 0.0 0.0 30.402535294623 0.0 31 2.3863842460457614E-4 0.0 0.0 31.065234199749906 0.0 32 2.3863842460457614E-4 0.0 0.0 31.653716554824793 0.0 33 2.3863842460457614E-4 0.0 0.0 32.238380695106 0.0 34 2.3863842460457614E-4 0.0 0.0 32.819942535867355 0.0 35 2.3863842460457614E-4 0.0 0.0 33.44517520833134 0.0 36 2.3863842460457614E-4 0.0 0.0 33.97495251095351 0.0 37 2.3863842460457614E-4 0.0 0.0 34.523343610694816 0.0 38 2.3863842460457614E-4 0.0 0.0 35.119462395357054 0.0 39 2.3863842460457614E-4 0.0 0.0 35.72655854755109 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACAT 20 7.028149E-4 45.000004 10 ACGCACG 20 7.028149E-4 45.000004 1 CGATTAG 30 2.1621872E-6 45.000004 10 TAGTTCG 30 2.1621872E-6 45.000004 1 CGTTAGC 20 7.028149E-4 45.000004 40 TGGCACG 20 7.028149E-4 45.000004 10 ACTAGCG 20 7.028149E-4 45.000004 1 TCCGTTA 20 7.028149E-4 45.000004 38 ACGTATG 40 6.7975634E-9 45.000004 1 CGCGTAG 20 7.028149E-4 45.000004 10 ATACGAC 20 7.028149E-4 45.000004 13 TAAGCGC 20 7.028149E-4 45.000004 41 TAGTACG 20 7.028149E-4 45.000004 1 TGGTAAG 20 7.028149E-4 45.000004 1 TCGTTAG 25 3.8865473E-5 45.0 23 ACTGCGC 25 3.8865473E-5 45.0 27 GTCTACG 25 3.8865473E-5 45.0 1 GCGTTAG 25 3.8865473E-5 45.0 1 ACGGGTA 45 3.8380676E-10 45.0 5 AGGTTCG 25 3.8865473E-5 45.0 1 >>END_MODULE