SRR2935792.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935792.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1169438
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4070	0.3480304214503035	No Hit
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	2228	0.19051886461702117	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	2063	0.17640952320687373	TruSeq Adapter, Index 14 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	1534	0.1311741195343404	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT	1524	0.13031900793372542	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC	1446	0.12364913744892846	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG	1270	0.10859917327810452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCGT	20	7.0333364E-4	45.000004	18
CCCGATA	20	7.0333364E-4	45.000004	30
GTTAACG	60	3.6379788E-12	41.249996	1
TAGTACG	55	6.184564E-11	40.909092	1
ATATGCG	50	1.0822987E-9	40.500004	1
TTAAGCG	45	1.9283107E-8	40.0	1
TACGGGA	360	0.0	39.375	4
CGTTTTT	2060	0.0	39.32039	1
CGCATCG	35	6.248383E-6	38.571426	21
ACGGTTG	35	6.248383E-6	38.571426	1
CGTATGG	120	0.0	37.499996	2
GCTATCG	30	1.139934E-4	37.499996	16
TCAATCG	30	1.139934E-4	37.499996	30
GCGATGT	200	0.0	37.125004	9
ACGGTCT	140	0.0	36.964283	30
TAACGCC	55	2.750312E-9	36.81818	12
ACGGGAA	400	0.0	36.562504	5
GATCGCG	25	0.0021071231	36.000004	1
CGTTCGA	25	0.0021071231	36.000004	14
TAGTTCG	25	0.0021071231	36.000004	32