SRR2935790.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935790.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1584927
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25184	1.588969081856767	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	11255	0.7101273434044596	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	8468	0.534283282447709	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT	6513	0.41093375278482863	No Hit
CGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	5349	0.33749188448426964	No Hit
CGTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT	4106	0.259065559486336	No Hit
CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	3150	0.1987473240092446	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	3102	0.19571879335767514	No Hit
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	2957	0.18657010701439244	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTC	2880	0.1817118390941665	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCC	2645	0.1668846577791911	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	2312	0.1458742263839281	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGT	2173	0.13710410637209158	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCG	1785	0.1126234836052386	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGC	1654	0.104358118701997	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCG	1633	0.10303313654193537	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTAA	20	7.034096E-4	45.000004	27
GTTGCGA	20	7.034096E-4	45.000004	16
CGACGGT	50	2.1827873E-11	45.0	28
GTTCGCG	30	2.1660253E-6	44.999996	1
CGTTTTT	15480	0.0	44.127907	1
CGTTTCT	1240	0.0	41.008064	1
CGTTCTG	955	0.0	40.759163	1
CGTTATT	455	0.0	40.54945	1
GCGAAAG	130	0.0	39.807693	1
GGCGTAG	105	0.0	38.57143	1
TAACGCG	35	6.2497893E-6	38.571426	1
GCGTTAT	35	6.2497893E-6	38.571426	19
CGTTTTC	860	0.0	38.197674	1
GTTTTTT	17955	0.0	37.84461	2
TCGAACG	30	1.1401173E-4	37.499996	1
TCGCGCG	30	1.1401173E-4	37.499996	2
CTACGAA	145	0.0	37.24138	11
TACGAAT	145	0.0	37.24138	12
CGTGCGG	195	0.0	36.923077	2
CGCGAGG	135	0.0	36.666668	2