##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935790.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1584927 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.124678297486255 33.0 31.0 34.0 30.0 34.0 2 32.21880313730538 33.0 31.0 34.0 30.0 34.0 3 32.123476349383914 33.0 31.0 34.0 30.0 34.0 4 35.835485798399546 37.0 35.0 37.0 35.0 37.0 5 34.90884879871439 37.0 35.0 37.0 33.0 37.0 6 35.41671761538544 37.0 35.0 37.0 33.0 37.0 7 35.98983297022513 37.0 35.0 37.0 35.0 37.0 8 36.00534977320722 37.0 35.0 37.0 35.0 37.0 9 37.88232139398218 39.0 38.0 39.0 35.0 39.0 10 37.5248172313299 39.0 37.0 39.0 35.0 39.0 11 37.47010240850209 39.0 37.0 39.0 35.0 39.0 12 37.49404294330275 39.0 37.0 39.0 35.0 39.0 13 37.52567342218285 39.0 37.0 39.0 35.0 39.0 14 38.72558988521238 40.0 38.0 41.0 35.0 41.0 15 38.81012374702431 40.0 38.0 41.0 35.0 41.0 16 38.78279630544498 40.0 38.0 41.0 35.0 41.0 17 38.76724227677363 40.0 38.0 41.0 35.0 41.0 18 38.59600536807058 40.0 38.0 41.0 35.0 41.0 19 38.38100492956458 40.0 37.0 41.0 34.0 41.0 20 38.25827372490973 40.0 36.0 41.0 34.0 41.0 21 38.17386542093106 40.0 36.0 41.0 34.0 41.0 22 38.21572539303072 40.0 36.0 41.0 34.0 41.0 23 38.21532600555104 40.0 36.0 41.0 34.0 41.0 24 38.17214420601075 40.0 36.0 41.0 34.0 41.0 25 38.03300909127045 40.0 36.0 41.0 34.0 41.0 26 38.059149727400694 40.0 36.0 41.0 34.0 41.0 27 38.07156228646493 40.0 36.0 41.0 34.0 41.0 28 37.95698035303834 40.0 36.0 41.0 34.0 41.0 29 37.894166103549246 40.0 36.0 41.0 34.0 41.0 30 37.69836907314974 40.0 36.0 41.0 33.0 41.0 31 37.53355391131579 40.0 36.0 41.0 33.0 41.0 32 37.24928908397674 40.0 35.0 41.0 33.0 41.0 33 36.842420502647755 40.0 35.0 41.0 31.0 41.0 34 36.55287972253612 40.0 35.0 41.0 30.0 41.0 35 36.370526844454034 40.0 35.0 41.0 29.0 41.0 36 36.23359372387498 40.0 35.0 41.0 29.0 41.0 37 36.16103706984612 40.0 35.0 41.0 28.0 41.0 38 36.07750767070029 40.0 35.0 41.0 27.0 41.0 39 36.00119248394405 40.0 35.0 41.0 26.0 41.0 40 35.92467413325661 40.0 35.0 41.0 26.0 41.0 41 35.82975178036591 39.0 35.0 41.0 25.0 41.0 42 35.81662057621581 39.0 35.0 41.0 25.0 41.0 43 35.724500245121696 39.0 35.0 41.0 24.0 41.0 44 35.617777348735935 39.0 35.0 41.0 24.0 41.0 45 35.572319734599766 39.0 35.0 41.0 23.0 41.0 46 35.47395116620513 39.0 35.0 41.0 23.0 41.0 47 35.40364319618506 39.0 35.0 41.0 23.0 41.0 48 35.331212099989465 39.0 35.0 41.0 23.0 41.0 49 35.31207620287874 39.0 35.0 41.0 23.0 41.0 50 35.21791666114591 39.0 35.0 41.0 23.0 41.0 51 34.19228267295591 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 9.0 9 25.0 10 42.0 11 38.0 12 23.0 13 44.0 14 31.0 15 50.0 16 104.0 17 182.0 18 380.0 19 785.0 20 1358.0 21 2237.0 22 3500.0 23 5860.0 24 10329.0 25 18645.0 26 27881.0 27 30513.0 28 27955.0 29 24855.0 30 24808.0 31 27531.0 32 33437.0 33 44333.0 34 73856.0 35 97215.0 36 103126.0 37 152488.0 38 293872.0 39 579015.0 40 399.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.76154990103645 19.830061573813808 21.889651700046752 20.518736825102984 2 40.32173090621839 21.894446873578406 22.183545362026138 15.600276858177065 3 28.348876635958625 21.553169325779674 34.78097098478353 15.316983053478172 4 24.939634443731478 23.435779692061526 34.591498535894715 17.033087328312284 5 22.20670100263293 28.755141403988954 32.02185337242662 17.0163042209515 6 23.32940255292515 30.96243549387448 31.791685042907343 13.91647691029303 7 72.63886601717303 4.9874221336377005 17.518787931557732 4.854923917631537 8 74.75921603960309 4.2417095550773 16.530540523317477 4.468533882002136 9 68.50271337418064 6.483326992347281 18.4806618853739 6.533297748098176 10 32.33751459846415 27.86967475473634 25.790399179268192 14.002411467531312 11 23.130655228915906 23.913214930403733 34.515595986439756 18.440533854240606 12 20.531292608429283 22.066252893666398 37.36538023517802 20.037074262726296 13 20.875914158822457 21.968835157707577 39.324334811634856 17.830915871835106 14 18.507792472460878 25.5076101296779 37.23338677428046 18.75121062358077 15 17.74883007229986 25.869771920094742 38.69143499984542 17.689963007759978 16 20.28005075312617 26.34310602317962 35.900454721258455 17.476388502435757 17 20.832631408260443 25.67752331810866 34.14750332349692 19.34234195013398 18 20.836290882797755 25.219331868281632 35.0084262555941 18.935950993326507 19 19.768102884233784 27.141250038645314 33.86282144224939 19.22782563487151 20 20.307181340213145 26.552074638137906 33.9536142674079 19.18712975424105 21 20.769726302851804 26.484500547974765 35.410842265921396 17.334930883252035 22 20.283836416440632 23.686201320313174 35.408507773544144 20.62145448970205 23 18.569372595709453 25.70995383383588 35.32919812710617 20.391475443348494 24 19.199243876847323 24.731801527767523 35.87117892495995 20.1977756704252 25 20.178027126801425 26.467717440613985 33.56589924961844 19.788356182966155 26 18.97645759079125 26.755238569347355 33.846543089997205 20.42176074986419 27 19.48802689335219 25.544331063828174 34.210786995237 20.756855047582633 28 18.988130052677505 25.6090028121169 34.42877810776143 20.974089027444165 29 18.890964694272984 25.015221521243564 34.833402421688824 21.260411362794628 30 19.22561733127141 26.014825919427203 34.69768639186537 20.06187035743602 31 19.160251544708366 27.003388799610327 32.59809442327627 21.238265232405027 32 19.11690569975778 27.832133593534593 32.30224483525109 20.74871587145654 33 19.141007756193186 28.50478287012588 31.320685432199717 21.033523941481217 34 18.205948917521123 27.6354683843483 32.31858628189185 21.83999641623873 35 19.398874522296612 27.68089634412184 31.311852217799306 21.60837691578224 36 20.139728832936786 27.82778008072296 31.561705996553783 20.47078508978647 37 19.524369261171017 27.602974774232504 32.124634131414254 20.74802183318222 38 19.659959102217325 27.784055669440928 31.45318364820588 21.102801580135868 39 19.80690593320702 26.51043234167883 31.59382104033814 22.088840684776017 40 21.195865803283056 25.949333944087016 32.27719636298706 20.577603889642866 41 19.533833419457174 26.516867969313413 32.096430939721515 21.8528676715079 42 20.169698667509607 26.71290223461396 32.43278712521144 20.68461197266499 43 20.397469410263056 26.31105407378384 32.147285016912456 21.144191499040648 44 20.572808716111215 26.417115740977344 30.640212451425207 22.369863091486234 45 20.047421742452492 25.864598180231646 30.56191231520442 23.526067762111442 46 20.70505455456308 25.770082786147245 30.680340482558506 22.844522176731168 47 19.88230372755338 25.813176253543542 32.14924094295826 22.155279075944822 48 19.158232524273988 25.540671589290863 32.68346113101739 22.617634755417757 49 19.946786192676385 24.721138576098458 32.53777618779918 22.794299043425976 50 18.664392744902447 24.80909215377112 33.4956121007466 23.03090300057984 51 18.79613382824572 24.19840156675986 32.33770388162988 24.667760723364545 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 575.0 1 1014.0 2 1453.0 3 21942.5 4 42432.0 5 28410.0 6 14388.0 7 13961.5 8 13535.0 9 13579.0 10 13623.0 11 13465.5 12 13308.0 13 12818.5 14 12329.0 15 11842.5 16 11356.0 17 10788.5 18 10221.0 19 9594.5 20 8968.0 21 9316.5 22 9665.0 23 9982.5 24 10300.0 25 11015.0 26 13258.5 27 14787.0 28 17991.5 29 21196.0 30 24347.5 31 27499.0 32 31478.5 33 35458.0 34 41064.5 35 46671.0 36 51563.0 37 56455.0 38 61747.5 39 67040.0 40 74663.5 41 82287.0 42 92471.5 43 102656.0 44 128733.0 45 154810.0 46 159089.0 47 163368.0 48 157672.0 49 151976.0 50 134225.5 51 116475.0 52 104141.5 53 91808.0 54 82272.0 55 72736.0 56 65313.0 57 57890.0 58 52299.0 59 46708.0 60 41437.5 61 36167.0 62 31409.5 63 26652.0 64 21975.0 65 17298.0 66 13380.0 67 9462.0 68 7349.0 69 5236.0 70 4058.0 71 2880.0 72 2290.0 73 1700.0 74 1303.5 75 705.5 76 504.0 77 389.5 78 275.0 79 180.0 80 85.0 81 58.0 82 31.0 83 21.5 84 12.0 85 9.0 86 6.0 87 4.5 88 3.0 89 3.0 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1584927.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.10717382810879 #Duplication Level Percentage of deduplicated Percentage of total 1 74.73336085525483 24.74210368593703 2 9.016262992250967 5.9700597232879415 3 3.447464958129213 3.4240746490529292 4 1.9965928905945438 2.6440619157151906 5 1.3346038891144303 2.209248147429074 6 1.0362489380526203 2.0584364232780743 7 0.8085467663506315 1.8738088839207936 8 0.6661758465320884 1.76441596409803 9 0.5986249533445527 1.783690234939946 >10 6.135013279781084 41.71606556241145 >50 0.18601747867524224 3.826299585766171 >100 0.03660846204222501 2.174899254685326 >500 0.0013630795279586227 0.32234079195473286 >1k 0.00214198211536355 1.8307022938277098 >5k 5.841769405536955E-4 1.310637660087944 >10k+ 3.8945129370246363E-4 2.3491552236077022 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25184 1.588969081856767 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT 11255 0.7101273434044596 No Hit CGTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 8468 0.534283282447709 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT 6513 0.41093375278482863 No Hit CGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG 5349 0.33749188448426964 No Hit CGTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT 4106 0.259065559486336 No Hit CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC 3150 0.1987473240092446 No Hit GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 3102 0.19571879335767514 No Hit GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC 2957 0.18657010701439244 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTC 2880 0.1817118390941665 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCC 2645 0.1668846577791911 No Hit CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT 2312 0.1458742263839281 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGT 2173 0.13710410637209158 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCG 1785 0.1126234836052386 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGC 1654 0.104358118701997 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCG 1633 0.10303313654193537 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.892831657230901E-4 0.0 0.0 0.1517420045213439 0.0 2 1.892831657230901E-4 0.0 0.0 0.6470960492186706 0.0 3 1.892831657230901E-4 0.0 0.0 1.2469974957837175 0.0 4 1.892831657230901E-4 0.0 0.0 1.910939746751743 0.0 5 1.892831657230901E-4 0.0 0.0 3.533727420884369 0.0 6 1.892831657230901E-4 0.0 0.0 5.422899603577957 0.0 7 1.892831657230901E-4 0.0 0.0 6.677279142824875 0.0 8 1.892831657230901E-4 0.0 0.0 8.024218150110384 0.0 9 1.892831657230901E-4 0.0 0.0 8.778763943071196 0.0 10 1.892831657230901E-4 0.0 0.0 9.89036088097433 0.0 11 1.892831657230901E-4 0.0 0.0 10.96807613221303 0.0 12 1.892831657230901E-4 0.0 0.0 11.897645759079126 0.0 13 1.892831657230901E-4 0.0 0.0 12.342335009751238 0.0 14 1.892831657230901E-4 0.0 0.0 12.5813996480595 0.0 15 1.892831657230901E-4 0.0 0.0 12.854787633752217 0.0 16 1.892831657230901E-4 0.0 0.0 13.289571065418155 0.0 17 2.5237755429745345E-4 0.0 0.0 13.841457682278111 0.0 18 2.5237755429745345E-4 0.0 0.0 14.471770624136001 0.0 19 2.5237755429745345E-4 0.0 0.0 14.883209132029425 0.0 20 3.154719428718168E-4 0.0 0.0 15.285057292859545 0.0 21 3.154719428718168E-4 0.0 0.0 15.750946258092643 0.0 22 3.785663314461802E-4 0.0 0.0 16.260622728996353 0.0 23 3.785663314461802E-4 0.0 0.0 16.78146690667772 0.0 24 3.785663314461802E-4 0.0 0.0 17.20748021833182 0.0 25 3.785663314461802E-4 0.0 0.0 17.590967912086803 0.0 26 3.785663314461802E-4 0.0 0.0 17.96152125618404 0.0 27 3.785663314461802E-4 0.0 0.0 18.35371597556228 0.0 28 4.4166072002054354E-4 0.0 0.0 18.753292738403726 0.0 29 4.4166072002054354E-4 0.0 0.0 19.185552394526688 0.0 30 4.4166072002054354E-4 0.0 0.0 19.726839154106152 0.0 31 4.4166072002054354E-4 0.0 0.0 20.161244019440645 0.0 32 4.4166072002054354E-4 0.0 0.0 20.595964356718007 0.0 33 4.4166072002054354E-4 0.0 0.0 21.01491109685178 0.0 34 4.4166072002054354E-4 0.0 0.0 21.434173308928425 0.0 35 4.4166072002054354E-4 0.0 0.0 21.856274768490916 0.0 36 4.4166072002054354E-4 0.0 0.0 22.274906036681816 0.0 37 4.4166072002054354E-4 0.0 0.0 22.691644473215486 0.0 38 4.4166072002054354E-4 0.0 0.0 23.13071832330448 0.0 39 4.4166072002054354E-4 0.0 0.0 23.635599620676537 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCGTAA 20 7.034096E-4 45.000004 27 GTTGCGA 20 7.034096E-4 45.000004 16 CGACGGT 50 2.1827873E-11 45.0 28 GTTCGCG 30 2.1660253E-6 44.999996 1 CGTTTTT 15480 0.0 44.127907 1 CGTTTCT 1240 0.0 41.008064 1 CGTTCTG 955 0.0 40.759163 1 CGTTATT 455 0.0 40.54945 1 GCGAAAG 130 0.0 39.807693 1 GGCGTAG 105 0.0 38.57143 1 TAACGCG 35 6.2497893E-6 38.571426 1 GCGTTAT 35 6.2497893E-6 38.571426 19 CGTTTTC 860 0.0 38.197674 1 GTTTTTT 17955 0.0 37.84461 2 TCGAACG 30 1.1401173E-4 37.499996 1 TCGCGCG 30 1.1401173E-4 37.499996 2 CTACGAA 145 0.0 37.24138 11 TACGAAT 145 0.0 37.24138 12 CGTGCGG 195 0.0 36.923077 2 CGCGAGG 135 0.0 36.666668 2 >>END_MODULE