SRR2935788.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935788.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1375415
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGC	15683	1.1402376737202953	No Hit
GAATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	14282	1.03837750787944	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCG	13819	1.0047149405815698	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	6114	0.4445203811213343	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3423	0.24887034095164004	No Hit
GAACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT	2909	0.21149980187797868	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCT	2701	0.19637709345906507	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	2579	0.1875070433287408	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2436	0.1771101812907377	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACACAACTT	2183	0.15871573306965533	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACACAACTTCGTA	2098	0.15253578011000316	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTC	1990	0.14468360458479806	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	1920	0.13959423155920214	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTAGA	25	3.891206E-5	45.000004	42
ATCGTAC	20	7.0337724E-4	45.0	21
TATCGTG	20	7.0337724E-4	45.0	1
ATTAGCG	140	0.0	40.17857	1
TACGGCT	1935	0.0	40.000004	7
CACGGGA	355	0.0	39.929577	4
CGTTTTT	2010	0.0	39.850746	1
CCGGTAT	85	0.0	39.705883	42
CCGTAAG	40	3.458881E-7	39.375	1
ATGCGTA	40	3.458881E-7	39.375	16
AGTTGCG	75	0.0	39.0	1
AGCGACT	730	0.0	38.219177	19
AACGAGC	740	0.0	38.006756	15
CGATGAA	705	0.0	37.659573	19
CGACGGT	120	0.0	37.500004	28
CACGCGT	30	1.1400385E-4	37.500004	43
TATAGCG	30	1.1400385E-4	37.500004	1
CGGTCTA	120	0.0	37.500004	31
ACCGTAG	30	1.1400385E-4	37.500004	41
GTACGCT	30	1.1400385E-4	37.500004	38