FastQCFastQC Report
Sat 14 Jan 2017
SRR2935787.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935787.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1446979
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57970.4006277907281308No Hit
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC37220.2572255713455413RNA PCR Primer, Index 16 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC33880.23414299723769316Illumina PCR Primer Index 7 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT26450.18279463627322856RNA PCR Primer, Index 16 (96% over 26bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT25440.1758145764382206No Hit
CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG24380.16848896908662808RNA PCR Primer, Index 16 (95% over 24bp)
CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT19150.13234469885188382RNA PCR Primer, Index 16 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC17590.12156361633444578No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG16390.11327047593641648No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACATA253.891308E-545.030
CGCAATA253.891308E-545.010
CGAATAT3550.042.46478714
GCTACGA3700.041.35135310
CAATGCG556.184564E-1140.9090921
CACGACG1650.040.9090926
CTACGAA3750.040.811
GCGATAT1050.040.7142879
TACGAAT3800.039.6710512
CGTTAGG2000.039.3752
CGTTTTT30200.039.337751
CACAACG3950.039.303812
TCGTTAG356.2494128E-638.5714261
CGACGGT1900.037.89473728
CGGTCTA1800.037.531
ACAACGA4450.036.9101113
GACCTAT3700.036.48648533
CTGACTA4050.036.1111122
TTTCGCG250.002107288236.01
CGCAACC250.002107288236.012