Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935787.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1446979 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5797 | 0.4006277907281308 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC | 3722 | 0.2572255713455413 | RNA PCR Primer, Index 16 (96% over 25bp) |
GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC | 3388 | 0.23414299723769316 | Illumina PCR Primer Index 7 (95% over 22bp) |
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT | 2645 | 0.18279463627322856 | RNA PCR Primer, Index 16 (96% over 26bp) |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 2544 | 0.1758145764382206 | No Hit |
CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG | 2438 | 0.16848896908662808 | RNA PCR Primer, Index 16 (95% over 24bp) |
CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT | 1915 | 0.13234469885188382 | RNA PCR Primer, Index 16 (95% over 21bp) |
CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC | 1759 | 0.12156361633444578 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 1639 | 0.11327047593641648 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACATA | 25 | 3.891308E-5 | 45.0 | 30 |
CGCAATA | 25 | 3.891308E-5 | 45.0 | 10 |
CGAATAT | 355 | 0.0 | 42.464787 | 14 |
GCTACGA | 370 | 0.0 | 41.351353 | 10 |
CAATGCG | 55 | 6.184564E-11 | 40.909092 | 1 |
CACGACG | 165 | 0.0 | 40.90909 | 26 |
CTACGAA | 375 | 0.0 | 40.8 | 11 |
GCGATAT | 105 | 0.0 | 40.714287 | 9 |
TACGAAT | 380 | 0.0 | 39.67105 | 12 |
CGTTAGG | 200 | 0.0 | 39.375 | 2 |
CGTTTTT | 3020 | 0.0 | 39.33775 | 1 |
CACAACG | 395 | 0.0 | 39.3038 | 12 |
TCGTTAG | 35 | 6.2494128E-6 | 38.571426 | 1 |
CGACGGT | 190 | 0.0 | 37.894737 | 28 |
CGGTCTA | 180 | 0.0 | 37.5 | 31 |
ACAACGA | 445 | 0.0 | 36.91011 | 13 |
GACCTAT | 370 | 0.0 | 36.486485 | 33 |
CTGACTA | 405 | 0.0 | 36.11111 | 22 |
TTTCGCG | 25 | 0.0021072882 | 36.0 | 1 |
CGCAACC | 25 | 0.0021072882 | 36.0 | 12 |