##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935787.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1446979 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.098528036688855 33.0 31.0 34.0 30.0 34.0 2 32.12349384476209 33.0 31.0 34.0 30.0 34.0 3 32.156485339455514 34.0 31.0 34.0 30.0 34.0 4 35.81194267504919 37.0 35.0 37.0 35.0 37.0 5 34.891538163304375 37.0 35.0 37.0 33.0 37.0 6 35.373735900797456 37.0 35.0 37.0 33.0 37.0 7 35.94067363797263 37.0 35.0 37.0 35.0 37.0 8 35.929003116147506 37.0 35.0 37.0 35.0 37.0 9 37.78098369084831 39.0 38.0 39.0 35.0 39.0 10 37.436664941232735 39.0 37.0 39.0 35.0 39.0 11 37.35064710683431 39.0 37.0 39.0 35.0 39.0 12 37.223746163558694 39.0 37.0 39.0 34.0 39.0 13 37.15723448647147 39.0 37.0 39.0 34.0 39.0 14 38.181372362694965 40.0 38.0 41.0 33.0 41.0 15 38.327441517810556 40.0 38.0 41.0 34.0 41.0 16 38.33689362457921 40.0 38.0 41.0 34.0 41.0 17 38.348796354335484 40.0 37.0 41.0 34.0 41.0 18 38.32978709435313 40.0 37.0 41.0 34.0 41.0 19 38.229695109604215 40.0 37.0 41.0 34.0 41.0 20 38.24487224762764 40.0 37.0 41.0 34.0 41.0 21 38.146846637027906 40.0 37.0 41.0 34.0 41.0 22 38.20033255492996 40.0 37.0 41.0 34.0 41.0 23 38.20796639066635 40.0 37.0 41.0 34.0 41.0 24 38.16606046114007 40.0 37.0 41.0 34.0 41.0 25 37.9852776025084 40.0 36.0 41.0 34.0 41.0 26 38.00181827103227 40.0 36.0 41.0 34.0 41.0 27 38.00516455318287 40.0 36.0 41.0 34.0 41.0 28 37.88112543443962 40.0 36.0 41.0 34.0 41.0 29 37.81185145050481 40.0 36.0 41.0 33.0 41.0 30 37.681486047827924 40.0 36.0 41.0 33.0 41.0 31 37.59890572012448 40.0 36.0 41.0 33.0 41.0 32 37.538096959250964 40.0 35.0 41.0 33.0 41.0 33 37.399895921088 40.0 35.0 41.0 33.0 41.0 34 37.27253125304514 40.0 35.0 41.0 32.0 41.0 35 37.21167273332923 40.0 35.0 41.0 32.0 41.0 36 37.12760931568461 40.0 35.0 41.0 32.0 41.0 37 37.078866382995194 39.0 35.0 41.0 32.0 41.0 38 36.996011690563584 39.0 35.0 41.0 32.0 41.0 39 36.92410187017227 39.0 35.0 41.0 32.0 41.0 40 36.77167118527636 39.0 35.0 41.0 31.0 41.0 41 36.682859944753865 39.0 35.0 41.0 31.0 41.0 42 36.69509854669626 39.0 35.0 41.0 31.0 41.0 43 36.612602532586855 39.0 35.0 41.0 31.0 41.0 44 36.42938356396326 39.0 35.0 41.0 31.0 41.0 45 36.37966065851681 39.0 35.0 41.0 31.0 41.0 46 36.239495528269586 38.0 35.0 41.0 30.0 41.0 47 36.155587607007426 38.0 35.0 40.0 30.0 41.0 48 36.09271316307977 38.0 35.0 40.0 30.0 41.0 49 36.0610084873381 38.0 35.0 40.0 30.0 41.0 50 35.943041329556266 38.0 35.0 40.0 30.0 41.0 51 34.76735391460415 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 16.0 9 27.0 10 49.0 11 34.0 12 31.0 13 26.0 14 48.0 15 61.0 16 118.0 17 227.0 18 429.0 19 668.0 20 1081.0 21 1652.0 22 2600.0 23 3719.0 24 5819.0 25 8109.0 26 11066.0 27 13518.0 28 15141.0 29 17224.0 30 20977.0 31 26894.0 32 35599.0 33 51069.0 34 93543.0 35 110551.0 36 106915.0 37 163158.0 38 282313.0 39 473936.0 40 359.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.737855214208366 21.301829535881307 24.12377788482072 12.836537365089612 2 32.74981876032756 23.791706721382962 25.338861172138643 18.119613346150842 3 32.547604353622276 22.87441628385761 27.050427131285247 17.527552231234868 4 28.301309141321333 25.324417285945405 26.96162141952302 19.412652153210242 5 24.86580662193439 30.269893343303533 25.24114033444853 19.62315970031355 6 26.02629340163195 33.3720116186897 25.369200244094763 15.232494735583584 7 79.77855932947196 5.932912640750143 9.18085196813499 5.107676061642913 8 80.72874589057616 5.0752637045872815 9.045120903620578 5.150869501215982 9 74.53342446573171 7.113994052436144 11.517997151306274 6.8345843305258756 10 41.836543584944906 24.22039297045776 18.59522494797782 15.34783849661951 11 30.273901694495915 24.828349271136624 24.415558207824716 20.482190826542748 12 27.322234807830657 21.08973247020171 30.220134500915357 21.367898221052275 13 25.2753495385904 22.337297224078583 31.48331800254185 20.90403523478917 14 21.318554035684002 24.730144666923294 31.815527384986236 22.13577391240647 15 20.265325205134282 24.558960427207303 33.09895997108458 22.07675439657383 16 23.767518395222044 24.346794252024388 29.59794164255321 22.287745710200355 17 24.16289386369809 24.79828663719377 27.54925952622671 23.48955997288143 18 25.007964870257275 24.121428161707943 29.217286498283666 21.653320469751115 19 24.052733315410933 26.318764819669116 27.236055257194476 22.392446607725475 20 24.72268084056507 26.874612554847026 27.268398504746788 21.134308099841117 21 24.617150629000147 26.28130746887135 28.720872935958297 20.380668966170205 22 23.70649470379321 23.46101774801155 29.13089961913753 23.701587929057713 23 22.479662800911417 25.072236708342 29.010372645352835 23.43772784539375 24 22.90883281650943 24.5049859051168 28.981968639489587 23.604212638884185 25 23.286308923626397 25.70168606455242 27.074131690922947 23.93787332089823 26 21.83936325268024 26.042810572924697 26.727754860298596 25.390071314096474 27 22.214766074697696 25.155790097852144 28.43109678855049 24.198347038899666 28 20.52759577022196 25.612189257757024 28.868283506533267 24.991931465487752 29 21.939088265966543 26.10549289243313 27.853686888337702 24.101731953262625 30 24.288949597748136 24.39800439398222 28.013191621993133 23.29985438627651 31 24.170426799559635 25.968586966362334 26.717181106291104 23.143805127786926 32 23.670903309585004 25.79719539813639 26.196233670288233 24.335667621990368 33 24.005324196135536 24.10297592432233 26.001413980437864 25.89028589910427 34 21.07121112331278 25.093384216356974 28.389631086560346 25.445773573769902 35 21.418279048970305 26.31897214817907 26.292019441885472 25.970729360965155 36 23.55583598656235 26.454772322196796 25.246047109184033 24.74334458205682 37 21.57197858434711 26.56458732296737 26.92672112034798 24.93671297233754 38 21.354767415422064 25.92345846069639 26.125465538891717 26.59630858498983 39 21.628786596073613 24.43518530676672 26.100102351174414 27.835925745985257 40 23.23233440153589 24.078234722134876 27.385193565352367 25.30423731097687 41 20.76954814133446 25.032360524928144 26.331550077782744 27.866541255954647 42 21.367760002045642 23.828818524664143 27.805033798002597 26.998387675287617 43 22.233840297613163 23.252376157497796 28.134202362301043 26.379581182587998 44 22.45989748296278 23.141178966660885 27.420093864527406 26.978829685848932 45 22.245934460693626 23.341458307273292 26.438946245937224 27.97366098609586 46 22.515254195119624 23.76019278787045 27.11103616569418 26.613516851315744 47 20.673762369737226 24.76352455702536 29.01299880647888 25.54971426675854 48 20.300363723315957 24.57250588985742 29.094271582379566 26.032858804447056 49 22.52769390571667 22.859557740644473 28.82308589136401 25.789662462274848 50 20.861532890249272 23.019269802809855 28.992196845980487 27.12700046096039 51 20.64563480188724 22.518571451278838 27.50544410112379 29.33034964571013 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 506.0 1 1279.0 2 2052.0 3 5902.0 4 9752.0 5 6412.5 6 3073.0 7 3019.0 8 2965.0 9 3012.0 10 3059.0 11 3026.0 12 2993.0 13 2965.0 14 2937.0 15 3047.0 16 3157.0 17 3030.5 18 2904.0 19 2963.5 20 3023.0 21 3464.0 22 3905.0 23 4364.5 24 4824.0 25 5530.0 26 7585.5 27 8935.0 28 10948.5 29 12962.0 30 15255.0 31 17548.0 32 21051.0 33 24554.0 34 29397.0 35 34240.0 36 36573.5 37 38907.0 38 41800.5 39 44694.0 40 49405.5 41 54117.0 42 58065.0 43 62013.0 44 68731.0 45 75449.0 46 83177.0 47 90905.0 48 108282.5 49 125660.0 50 135899.5 51 146139.0 52 145313.5 53 144488.0 54 126411.0 55 108334.0 56 100083.0 57 91832.0 58 85509.5 59 79187.0 60 71571.0 61 63955.0 62 58319.0 63 52683.0 64 45641.0 65 38599.0 66 33876.0 67 29153.0 68 23939.0 69 18725.0 70 15948.0 71 13171.0 72 10717.0 73 8263.0 74 6960.0 75 4453.5 76 3250.0 77 2209.5 78 1169.0 79 833.5 80 498.0 81 385.0 82 272.0 83 183.0 84 94.0 85 96.5 86 99.0 87 58.5 88 18.0 89 12.0 90 6.0 91 7.0 92 8.0 93 7.0 94 6.0 95 3.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1446979.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.449798472929743 #Duplication Level Percentage of deduplicated Percentage of total 1 71.79438337870776 19.707413552337847 2 10.918016906554872 5.99394727617942 3 4.04490831326205 3.3309575412156427 4 2.02933923279326 2.2281981189353934 5 1.28488424206297 1.7634906752835804 6 0.8634754471010411 1.422133620554789 7 0.6619199181366373 1.271869785064819 8 0.5293953311437587 1.1625436121924866 9 0.4457604700660954 1.1012431563461476 >10 6.784747235861429 46.30891084997343 >50 0.571626793196394 9.455297291376526 >100 0.06405269794682192 3.2651391322965635 >500 0.003357601074854971 0.5978703327732955 >1k 0.0038741550863711205 1.9799979430443013 >5k 2.582770057580747E-4 0.4109871124258026 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5797 0.4006277907281308 No Hit CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 3722 0.2572255713455413 RNA PCR Primer, Index 16 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 3388 0.23414299723769316 Illumina PCR Primer Index 7 (95% over 22bp) CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT 2645 0.18279463627322856 RNA PCR Primer, Index 16 (96% over 26bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2544 0.1758145764382206 No Hit CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG 2438 0.16848896908662808 RNA PCR Primer, Index 16 (95% over 24bp) CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT 1915 0.13234469885188382 RNA PCR Primer, Index 16 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC 1759 0.12156361633444578 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1639 0.11327047593641648 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.146570199014637E-4 0.0 0.0 0.19447414233378646 0.0 2 4.146570199014637E-4 0.0 0.0 0.876723159078328 0.0 3 4.146570199014637E-4 0.0 0.0 1.3401714883215305 0.0 4 4.146570199014637E-4 0.0 0.0 1.8466059286278516 0.0 5 4.146570199014637E-4 0.0 0.0 3.089540345782489 0.0 6 4.146570199014637E-4 0.0 0.0 4.169445444612534 0.0 7 4.146570199014637E-4 0.0 0.0 5.0178337073309285 0.0 8 4.146570199014637E-4 0.0 0.0 6.197187381434008 0.0 9 4.146570199014637E-4 0.0 0.0 6.747921013366469 0.0 10 4.837665232183743E-4 0.0 0.0 7.7672861872909005 0.0 11 4.837665232183743E-4 0.0 0.0 9.139317156641527 0.0 12 4.837665232183743E-4 0.0 0.0 10.235877645770948 0.0 13 4.837665232183743E-4 0.0 0.0 10.71003794802827 0.0 14 4.837665232183743E-4 0.0 0.0 10.93803019947076 0.0 15 4.837665232183743E-4 0.0 0.0 11.267336982775838 0.0 16 5.528760265352849E-4 0.0 0.0 11.893330863820415 0.0 17 5.528760265352849E-4 0.0 0.0 12.603983886428207 0.0 18 5.528760265352849E-4 0.0 0.0 13.424313690799936 0.0 19 6.219855298521955E-4 0.0 0.0 13.920105267595453 0.0 20 6.219855298521955E-4 0.0 0.0 14.4152057493578 0.0 21 6.910950331691061E-4 0.0 0.0 14.998144409835941 0.0 22 6.910950331691061E-4 0.0 0.0 15.64037902415999 0.0 23 6.910950331691061E-4 0.0 0.0 16.250132171925095 0.0 24 6.910950331691061E-4 0.0 0.0 16.752972918058934 0.0 25 6.910950331691061E-4 0.0 0.0 17.214071524189364 0.0 26 6.910950331691061E-4 0.0 0.0 17.645522153396836 0.0 27 7.602045364860167E-4 0.0 0.0 18.129634224131795 0.0 28 7.602045364860167E-4 0.0 0.0 18.579882638241468 0.0 29 7.602045364860167E-4 0.0 0.0 19.079544347222733 0.0 30 7.602045364860167E-4 0.0 0.0 19.7075424038635 0.0 31 8.293140398029274E-4 0.0 0.0 20.1808042825777 0.0 32 9.675330464367486E-4 0.0 0.0 20.66353416324632 0.0 33 9.675330464367486E-4 0.0 0.0 21.152898556233367 0.0 34 9.675330464367486E-4 0.0 0.0 21.630928990676438 0.0 35 9.675330464367486E-4 0.0 0.0 22.176202971846863 0.0 36 0.0010366425497536592 0.0 0.0 22.646493141918437 0.0 37 0.0010366425497536592 0.0 0.0 23.1216209772222 0.0 38 0.0011057520530705699 0.0 0.0 23.663163045213512 0.0 39 0.0011057520530705699 0.0 0.0 24.401114321631482 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACATA 25 3.891308E-5 45.0 30 CGCAATA 25 3.891308E-5 45.0 10 CGAATAT 355 0.0 42.464787 14 GCTACGA 370 0.0 41.351353 10 CAATGCG 55 6.184564E-11 40.909092 1 CACGACG 165 0.0 40.90909 26 CTACGAA 375 0.0 40.8 11 GCGATAT 105 0.0 40.714287 9 TACGAAT 380 0.0 39.67105 12 CGTTAGG 200 0.0 39.375 2 CGTTTTT 3020 0.0 39.33775 1 CACAACG 395 0.0 39.3038 12 TCGTTAG 35 6.2494128E-6 38.571426 1 CGACGGT 190 0.0 37.894737 28 CGGTCTA 180 0.0 37.5 31 ACAACGA 445 0.0 36.91011 13 GACCTAT 370 0.0 36.486485 33 CTGACTA 405 0.0 36.11111 22 TTTCGCG 25 0.0021072882 36.0 1 CGCAACC 25 0.0021072882 36.0 12 >>END_MODULE