SRR2935786.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935786.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	813722
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	3151	0.3872329862041336	No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	2364	0.2905169087231266	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	2166	0.2661842742361642	No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT	1619	0.19896229916359642	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT	1336	0.16418383674031178	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1310	0.16098864231273088	No Hit
TCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1040	0.12780777710323674	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC	967	0.11883665428733647	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC	966	0.11871376219396797	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG	957	0.1176077333536515	No Hit
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCACC	922	0.1133065100857541	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGAG	35	1.2113378E-7	45.000004	1
CGTCTCA	45	3.8380676E-10	45.0	10
CTAAGCG	25	3.8897975E-5	45.0	1
TAACGCC	25	3.8897975E-5	45.0	12
CCGTATG	20	7.0320716E-4	45.0	29
TCCGTTA	20	7.0320716E-4	45.0	13
TCGAAAT	25	3.8897975E-5	45.0	19
TCAACTT	755	0.0	43.21192	3
CTCAACT	795	0.0	41.88679	2
TACGCGC	60	3.6379788E-12	41.250004	34
AATGTCG	60	3.6379788E-12	41.250004	15
CTTGACC	760	0.0	41.151314	7
CGAAAGG	180	0.0	40.0	2
ACTTGAC	790	0.0	39.588608	6
CAACTTG	805	0.0	39.40994	4
ACGGGTA	120	0.0	39.375004	5
TGATCGT	40	3.456571E-7	39.375	28
TTGACCC	710	0.0	38.978874	8
TACGGGT	70	0.0	38.57143	4
TATAGCG	35	6.2460385E-6	38.57143	1