SRR2935782.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935782.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1351445
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7543	0.5581433206678776	No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	2369	0.17529385213604698	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	2116	0.15657314948074097	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	2049	0.15161549304633187	No Hit
ACCATACGGAAAGAGTTCCGAACCCGCATGGTTATGAACAATGGACTCAAC	1725	0.12764115446799537	No Hit
CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	1662	0.12297947752220771	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	1620	0.11987169289168262	Illumina Single End Adapter 2 (95% over 21bp)
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1413	0.10455475435552317	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT	1369	0.10129897998068735	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG	1362	0.10078101587559982	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGCG	30	2.165787E-6	45.000004	1
TCGAACG	30	2.165787E-6	45.000004	1
ATACGGA	240	0.0	43.125004	4
CGTTTTT	3615	0.0	42.074688	1
CCATACG	250	0.0	41.4	2
TCGTTAG	50	1.0822987E-9	40.500004	1
TATAGCG	45	1.9286745E-8	40.0	1
CATCGAT	30	1.14002796E-4	37.500004	19
TACGGGC	140	0.0	36.964283	4
TTACGGG	385	0.0	36.81818	3
CATACGG	300	0.0	36.750004	3
TTAACGG	125	0.0	36.000004	2
TATCGCG	25	0.0021072389	36.000004	1
TACGGAA	290	0.0	35.689655	5
GCGTAAG	120	0.0	35.625004	1
ACCCGAT	175	0.0	34.714287	41
CCCGCAT	300	0.0	34.500004	23
CCGAACC	315	0.0	34.285713	18
CGGGATA	145	0.0	34.137928	6
CGAACCC	310	0.0	34.112904	19