SRR2935781.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935781.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495272
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2601	0.5251659694067099	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2464	0.4975044016217351	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	1537	0.3103345232518697	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	904	0.18252596553005218	No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	867	0.17505532313556996	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	641	0.12942383175305688	No Hit
ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	640	0.129221922499152	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC	512	0.10337753799932159	No Hit
GCTAGTAGGGACCCACTGTTTGTTTATTCATGTCAGCTGTTCAAATGCAAA	511	0.10317562874541666	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGG	55	1.8189894E-12	45.000004	2
CCCGCAT	30	2.1629894E-6	45.000004	23
CGGGTCG	25	3.88758E-5	45.0	6
TCGTTTG	25	3.88758E-5	45.0	1
CAGCGCG	20	7.0293946E-4	45.0	1
AGATCGG	40	6.8012014E-9	45.0	2
CACGGAC	20	7.0293946E-4	45.0	42
GCAACGT	20	7.0293946E-4	45.0	17
CAACCCG	45	3.8380676E-10	45.0	23
GACCCGT	40	6.8012014E-9	45.0	41
TTAAGCG	25	3.88758E-5	45.0	1
CCATACG	20	7.0293946E-4	45.0	2
GACGGTC	35	1.2100645E-7	45.0	29
CTCGCTA	25	3.88758E-5	45.0	21
CTCGCGG	20	7.0293946E-4	45.0	2
CTCGAGG	20	7.0293946E-4	45.0	2
CGTAAGT	20	7.0293946E-4	45.0	20
CGTAAAT	20	7.0293946E-4	45.0	16
ATAACGG	40	6.8012014E-9	45.0	2
ACGTAGG	25	3.88758E-5	45.0	2